TheJacksonLaboratory / PDX-Analysis-WorkflowsLinks
☆12Updated 7 years ago
Alternatives and similar repositories for PDX-Analysis-Workflows
Users that are interested in PDX-Analysis-Workflows are comparing it to the libraries listed below
Sorting:
- Pipeline to call neoantigens from intron retention events derived from RNA-Seq data.☆29Updated 4 years ago
- A novel PSSM based software for predicting class I peptide-HLA binding affinity☆17Updated 8 years ago
- xOmicsShiny: an R Shiny application for cross-omics data analysis and pathway mapping, Bioinformatics Advances, Volume 5, Issue 1, 2025, …☆36Updated this week
- NeoFuse is a user-friendly pipeline for the prediction of fusion neoantigens from tumor RNA-seq data.☆20Updated 3 years ago
- ⚙️ Matching T-cell repertoire against a database of TCR antigen specificities☆39Updated 7 years ago
- ☆17Updated last year
- ☆23Updated 3 years ago
- IRIS: Isoform peptides from RNA splicing for Immunotherapy target Screening☆28Updated last year
- Comparison of Adaptive Immune Receptor Repertoires☆28Updated last year
- QBRC Neoantigen calling pipeline with CSiN calculation embedded☆26Updated 4 years ago
- A Shiny web server for interactive visualization and analysis of RNA-seq data☆22Updated 4 years ago
- R package for nucleotide conversion sequencing data analysis☆16Updated 3 weeks ago
- ImReP is a computational method for rapid and accurate profiling of the adaptive immune repertoire from regular RNA-Seq data.☆29Updated 6 years ago
- Explore the cancer relevance of your gene list☆52Updated last month
- A neoantigen calling pipeline begins from variants record file (MAF) (Not maintain now)☆30Updated 6 years ago
- Code to run OncoSig Analyses☆18Updated 5 years ago
- Detecting Aberrant Splicing Events from RNA-sequencing data☆16Updated last year
- Repository for the paper "The impact of package selection and versioning on single-cell RNA-seq analysis"☆21Updated 2 months ago
- Workflow for ZINB-WaVE + DESeq2 intergration for single-cell RNA-seq☆30Updated 5 years ago
- ☆24Updated last year
- Methods to use SNPs or gene expression to classify single cell RNAseq to reference profiles☆30Updated 5 years ago
- Tools for assessing clustering robustness☆31Updated last week
- VirusScan Pipeline☆12Updated this week
- Seq2Neo: a comprehensive pipeline for cancer neoantigen immunogenicity prediction☆22Updated 2 years ago
- Snakemake workflow for neoantigen prediction☆14Updated 2 years ago
- SCASA: Single cell transcript quantification tool☆22Updated 2 years ago
- predicts neoepitopes from phased somatic mutations detected using tumor/normal DNA-seq data☆27Updated 2 years ago
- Combined mutation recurrence and functional impact to identify coding and non-coding cancer drivers☆15Updated 7 years ago
- ☆15Updated 11 months ago
- Network Visualization using both GUI and Programming☆29Updated 8 months ago