TheJacksonLaboratory / PDX-Analysis-WorkflowsLinks
☆12Updated 7 years ago
Alternatives and similar repositories for PDX-Analysis-Workflows
Users that are interested in PDX-Analysis-Workflows are comparing it to the libraries listed below
Sorting:
- xOmicsShiny: an R Shiny application for cross-omics data analysis and pathway mapping, Bioinformatics Advances, Volume 5, Issue 1, 2025, …☆33Updated 2 months ago
- Pipeline to call neoantigens from intron retention events derived from RNA-Seq data.☆28Updated 4 years ago
- A novel PSSM based software for predicting class I peptide-HLA binding affinity☆17Updated 8 years ago
- ImReP is a computational method for rapid and accurate profiling of the adaptive immune repertoire from regular RNA-Seq data.☆29Updated 6 years ago
- ☆20Updated 3 years ago
- NeoFuse is a user-friendly pipeline for the prediction of fusion neoantigens from tumor RNA-seq data.☆19Updated 3 years ago
- QBRC Neoantigen calling pipeline with CSiN calculation embedded☆24Updated 3 years ago
- IRIS: Isoform peptides from RNA splicing for Immunotherapy target Screening☆26Updated last year
- ☆17Updated last year
- Code to run OncoSig Analyses☆18Updated 5 years ago
- 🧭 Navigate single-cell RNA-seq datasets in your web browser.☆29Updated 2 years ago
- Comparison of Adaptive Immune Receptor Repertoires☆28Updated 8 months ago
- Seq2Neo: a comprehensive pipeline for cancer neoantigen immunogenicity prediction☆21Updated 2 years ago
- Explore the cancer relevance of your gene list☆52Updated 3 weeks ago
- R package for nucleotide conversion sequencing data analysis☆15Updated 7 months ago
- ⚙️ Matching T-cell repertoire against a database of TCR antigen specificities☆39Updated 6 years ago
- Snakemake workflow for neoantigen prediction☆14Updated 2 years ago
- A Shiny web server for interactive visualization and analysis of RNA-seq data☆22Updated 4 years ago
- Workflow for ZINB-WaVE + DESeq2 intergration for single-cell RNA-seq☆31Updated 4 years ago
- VirusScan Pipeline☆11Updated 8 months ago
- Combined mutation recurrence and functional impact to identify coding and non-coding cancer drivers☆15Updated 6 years ago
- a R package to identify neoantigens from NGS data☆19Updated 8 years ago
- TFregulomeR reveals transcription factors’ context-specific features and functions☆16Updated 3 years ago
- A neoantigen calling pipeline begins from variants record file (MAF) (Not maintain now)☆29Updated 6 years ago
- Toolkit for benchmarking fusion transcript predictions☆19Updated last year
- ☆19Updated last year
- Please consider using/contributing to https://github.com/nf-core/scdownstream☆26Updated last year
- PTa Analysis TOolkit☆13Updated last week
- ☆24Updated last year
- ☆35Updated 3 years ago