ayshwaryas / ddqc
Biology-centered data-driven quality control for scRNA-seq
☆15Updated last year
Alternatives and similar repositories for ddqc:
Users that are interested in ddqc are comparing it to the libraries listed below
- COMET Single-Cell Marker Detection tool☆31Updated 2 years ago
- psupertime is pseudotime ordering for single cell RNA-seq data with sequential labels☆38Updated 2 years ago
- Cell type specific enrichments using finemapped variants and quantitative epigenetic data☆43Updated last year
- Snakefile-based process to turn 1.4 million ocular cells into a unified meta-atlas☆25Updated last year
- Clone identification from single-cell data☆61Updated 2 years ago
- Covarying neighborhood analysis (CNA) is a method for finding structure in- and conducting association analysis with multi-sample single-…☆48Updated last month
- Nuclear fraction QC metric to detect empty droplets and damaged cells in scRNA-seq data☆35Updated 3 years ago
- .h5mu files interface for Seurat☆29Updated last year
- ☆29Updated last year
- ☆11Updated 3 years ago
- Mitochondrial Alteration Enrichment and Genome Analysis Toolkit☆19Updated last year
- Comprehensive pipeline for donor demultiplexing in single cell☆24Updated 9 months ago
- ☆30Updated 2 months ago
- Discover differential transcript usage from polyA-captured single cell RNA-seq data☆50Updated last year
- Single-cell Case Control Analysis☆48Updated 4 months ago
- ☆33Updated 5 years ago
- ☆37Updated last week
- ☆16Updated 8 months ago
- CellR: single-cell RNA-Seq guided deconvolution of cellular composition from bulk-tissue RNA-Seq☆17Updated 3 years ago
- Workflow for the Association of T-cell receptors from 3' single-cell RNA-seq (WAT3R)☆21Updated 2 years ago
- A suite of population scale analysis tools for single-cell genomics data including implementation of Demuxlet / Freemuxlet methods and au…☆47Updated 3 years ago
- ☆41Updated this week
- ☆46Updated 8 months ago
- Single Cell Epigenome-based Inference of Activity☆19Updated last year
- Bioinformatics pipeline for single-cell 3' UTR isoform quantification☆21Updated 4 months ago
- ☆37Updated 3 years ago
- Paired Insertion Counting for snATAC-seq data☆17Updated 7 months ago
- ☆33Updated 11 months ago
- scover☆23Updated last year
- FastIntegrate integrates thousands of scRNA-seq datasets and outputs batch-corrected values for downstream analysis☆23Updated 5 months ago