ayshwaryas / ddqc
Biology-centered data-driven quality control for scRNA-seq
☆15Updated last year
Related projects ⓘ
Alternatives and complementary repositories for ddqc
- psupertime is pseudotime ordering for single cell RNA-seq data with sequential labels☆38Updated 2 years ago
- Reconstruct the lineage topology of a scRNA-seq differentiation dataset.☆18Updated 4 years ago
- .h5mu files interface for Seurat☆26Updated 11 months ago
- COMET Single-Cell Marker Detection tool☆31Updated 2 years ago
- AnnData interoperability in R☆58Updated last week
- ☆29Updated last year
- Snakefile-based process to turn 1.4 million ocular cells into a unified meta-atlas☆24Updated 10 months ago
- Cell type specific enrichments using finemapped variants and quantitative epigenetic data☆42Updated last year
- Clone identification from single-cell data☆59Updated 2 years ago
- epigenome analysis to rank transcription factors☆30Updated last year
- ☆34Updated 6 months ago
- Single Cell Epigenome-based Inference of Activity☆19Updated last year
- Harmony framework for connecting scRNA-seq data from discrete time points☆45Updated 4 months ago
- ☆33Updated 5 years ago
- Bioinformatics pipeline for single-cell 3' UTR isoform quantification☆15Updated this week
- Covarying neighborhood analysis (CNA) is a method for finding structure in- and conducting association analysis with multi-sample single-…☆45Updated 3 weeks ago
- ☆29Updated 5 years ago
- Comprehensive pipeline for donor demultiplexing in single cell☆24Updated 5 months ago
- kallisto index tag extractor☆20Updated 5 years ago
- ☆27Updated 3 months ago
- A suite of population scale analysis tools for single-cell genomics data including implementation of Demuxlet / Freemuxlet methods and au…☆43Updated 3 years ago
- Single-cell Case Control Analysis☆47Updated 2 weeks ago
- Bulk-Sequence Single-Cell Gene Expression Deconvolution Pipeline☆42Updated last year
- scover☆22Updated last year
- Mitochondrial Alteration Enrichment and Genome Analysis Toolkit☆17Updated 10 months ago
- Nuclear fraction QC metric to detect empty droplets and damaged cells in scRNA-seq data☆33Updated 3 years ago
- ☆39Updated this week
- ☆16Updated 5 years ago
- ☆11Updated 3 years ago
- ☆40Updated 3 months ago