ayshwaryas / ddqcLinks
Biology-centered data-driven quality control for scRNA-seq
☆17Updated 2 years ago
Alternatives and similar repositories for ddqc
Users that are interested in ddqc are comparing it to the libraries listed below
Sorting:
- .h5mu files interface for Seurat☆32Updated last year
- COMET Single-Cell Marker Detection tool☆31Updated 3 years ago
- Comprehensive pipeline for donor demultiplexing in single cell☆24Updated this week
- Filtering of Poison noise on a single-cell RNA-seq UMI count matrix☆77Updated 2 months ago
- ☆44Updated last week
- psupertime is pseudotime ordering for single cell RNA-seq data with sequential labels☆41Updated 2 years ago
- A suite of population scale analysis tools for single-cell genomics data including implementation of Demuxlet / Freemuxlet methods and au…☆52Updated 4 years ago
- Reconstruct the lineage topology of a scRNA-seq differentiation dataset.☆18Updated 5 years ago
- Genotype-free demultiplexing of pooled single-cell RNA-Seq, using a hidden state model for identifying genetically distinct samples withi…☆41Updated 2 years ago
- Port of symphony algorithm of single-cell reference atlas mapping to Python☆29Updated 7 months ago
- Snakefile-based process to turn 1.4 million ocular cells into a unified meta-atlas☆26Updated last year
- ☆12Updated 4 years ago
- ☆35Updated 4 months ago
- Covarying neighborhood analysis (CNA) is a method for finding structure in- and conducting association analysis with multi-sample single-…☆53Updated last month
- ☆39Updated 9 months ago
- Genomic Features in Python from BioConductor's AnnotationHub☆22Updated last week
- scAR (single-cell Ambient Remover) is a deep learning model for removal of the ambient signals in droplet-based single cell omics☆53Updated 10 months ago
- Single-cell copy number calling and event history reconstruction.☆27Updated 6 months ago
- Bioinformatics pipeline for single-cell 3' UTR isoform quantification☆22Updated 7 months ago
- ☆34Updated 6 years ago
- Discover differential transcript usage from polyA-captured single cell RNA-seq data☆51Updated 2 years ago
- Multi-resolution Variational Inference☆22Updated 3 weeks ago
- ☆22Updated last year
- Single-cell Case Control Analysis☆50Updated 8 months ago
- A repository of pipelines for single-cell data in Nextflow DSL2☆75Updated 2 years ago
- Paired Insertion Counting for snATAC-seq data☆17Updated 2 months ago
- mutation(barcode) caller for 10x single cell data☆45Updated 5 years ago
- Cell type specific enrichments using finemapped variants and quantitative epigenetic data☆45Updated last year
- ☆21Updated 5 years ago
- R implementation of MULTI-seq sample classification workflow☆63Updated last year