Alternatives and similar repositories for forest-fire-clustering

Users that are interested in forest-fire-clustering are comparing it to the libraries listed below

• chenhcs / GIANT
  GIANT (Gene-based data Integration and ANalysis Technique) is a method for large-scale joint analyses of atlas-level single cell data.
  ☆14Updated 2 years ago
• visze / sequence_cnn_models
  ☆13Updated 10 months ago
• OSU-BMBL / scGNN2.0
  ☆12Updated 2 years ago
• CostaLab / MOJITOO
  MOJITOO: a fast and universal method for integration of multimodal single cell data
  ☆11Updated last year
• yuanzhiyuan / SODB_analysis
  ☆12Updated 2 years ago
• TencentAILabHealthcare / pysodb
  ☆26Updated last year
• KrishnaswamyLab / Gene-Signal-Pattern-Analysis
  Learning meaningful representations of genes
  ☆19Updated 5 months ago
• CostaLab / PILOT
  Detection of PatIent-Level distances from single cell genomics and pathomics data with Optimal Transport (PILOT)
  ☆23Updated 2 months ago
• kaizhang / single-cell-benchmark
  ☆11Updated 2 years ago
• yozhikoff / segmentation
  End-to-end pipeline for segmenting cell nuclei on histology slides
  ☆16Updated 3 years ago
• MarioniLab / oor_benchmark
  A sandbox for benchmarking detection of out-of-reference cells in single-cell genomics data
  ☆13Updated last year
• PYangLab / Matilda
  Matilda is a multi-task framework for learning from single-cell multimodal omics data. Matilda leverages the information from the multi-m…
  ☆22Updated 6 months ago
• Genentech / pascient
  ☆17Updated 7 months ago
• azizilab / decipher
  A single-cell analysis toolkit to jointly analyze samples from distinct conditions
  ☆34Updated 8 months ago
• coskunlab / scSpaMet
  ☆13Updated 2 years ago
• Teddy-XiongGZ / DeepGSEA
  ☆17Updated last year
• jranek / delve
  Feature selection for preserving biological trajectories in single-cell data
  ☆20Updated 6 months ago
• alexQiSong / scSTEM
  Single cell STEM (scSTEM) is a shiny app based R package for visualizing and clustering genes in pseudotime ordered single cell RNA-seq d…
  ☆19Updated 3 years ago
• davidliwei / PS
  Perturbation-response Score (PS) analysis is a method to quantify diverse perturbation responses and discover novel biological insights i…
  ☆17Updated last year
• DongqingSun96 / STRIDE
  STRIDE (Spatial TRanscRIptomics DEconvolution by topic modelling) is a cell-type deconvolution tool for spatial transcriptomics by using …
  ☆17Updated 3 years ago
• hsmaan / Iniquitate
  Analysis of imbalanced data and its impacts in a scRNA-seq integration setting
  ☆31Updated 9 months ago
• doraadong / UNIFAN
  Unsupervised cell functional annotation for single-cell RNA-Seq
  ☆22Updated 2 years ago
• FridleyLab / spatialGE
  Methods for visualization and analysis of spatially-resolved gene expression
  ☆21Updated 4 months ago
• shmohammadi86 / SCINET
  ☆19Updated 4 years ago
• liranmao / Spatial_multi_omics
  ☆13Updated 2 months ago
• shahcompbio / spectrum-tme
  Supporting material for publication: "Ovarian cancer mutational processes drive site-specific immune evasion"
  ☆24Updated 7 months ago
• whwanglab / PDAC
  ☆13Updated 3 years ago
• karthikj89 / humanpdac
  single cell analysis of treatment naive and treated human PDAC
  ☆25Updated 3 years ago
• jranek / EVI
  Integrating temporal gene expression modalities for trajectory inference and disease prediction
  ☆10Updated 3 years ago
• tabdelaal / SIRV
  Spatial RNA velocity
  ☆10Updated last year