gersteinlab / forest-fire-clustering
A clustering algorithm that can perform internal validation inspired by forest fire dynamics and self-organized criticality
☆16Updated 2 years ago
Alternatives and similar repositories for forest-fire-clustering:
Users that are interested in forest-fire-clustering are comparing it to the libraries listed below
- Matilda is a multi-task framework for learning from single-cell multimodal omics data. Matilda leverages the information from the multi-m…☆20Updated 3 months ago
- ☆15Updated 7 months ago
- A R/MATLAB package to construct and compare gene regulatory networks from single-cell transcriptomic data☆22Updated 2 months ago
- scPRAM accurately predicts single-cell gene expression perturbation response based on attention mechanism☆13Updated 4 months ago
- Single Cell Consensus Clustering with Speed☆20Updated 2 years ago
- Methods for visualization and analysis of spatially-resolved gene expression☆15Updated 3 months ago
- Spatial reconstruction of dissociated single-cell data☆17Updated last year
- Probabilistic factor models for spatially correlated data. Includes nonnegative and real-valued versions.☆14Updated 2 months ago
- Multiview Intercellular SpaTial modeling framework☆51Updated 11 months ago
- Unsupervised cell functional annotation for single-cell RNA-Seq☆22Updated 2 years ago
- Dynamical systems methods for RNA velocity analysis☆24Updated 3 years ago
- netNMF-sc: A network regularization algorithm for dimensionality reduction and imputation of single-cell expression data☆22Updated 3 years ago
- Regulatory networks with Direct Information in python☆40Updated last year
- ☆14Updated 2 years ago
- This repository contains codes used for the human fetal limb cell atlas.☆13Updated last month
- Simultaneous deep generative modeling and clustering of single cell genomic data☆30Updated 2 years ago
- ☆12Updated 2 years ago
- ☆53Updated 10 months ago
- CAST package☆30Updated 4 months ago
- Gene regulatory network inference for RNA velocity and pseudotime data☆24Updated 2 weeks ago
- ☆14Updated 3 years ago
- Image processing pipeline for spatial projects☆15Updated last year
- A sandbox for benchmarking detection of out-of-reference cells in single-cell genomics data☆13Updated 4 months ago
- The source code and results for different methods on annotating external testing datsets of human and mouse.☆12Updated 3 years ago
- Code, data and analysis for moslin.☆12Updated 4 months ago
- cTPnet Package☆24Updated 2 years ago
- R package that performs sparse factor analysis and differential gene expression discovery simultaneously on single-cell CRISPR screening …☆18Updated last year
- ☆29Updated 2 weeks ago
- ☆10Updated last year
- ☆11Updated last year