koesterlab / microphaserLinks
☆11Updated 2 years ago
Alternatives and similar repositories for microphaser
Users that are interested in microphaser are comparing it to the libraries listed below
Sorting:
- Visualization tool for temporal clonal evolution.☆18Updated 5 years ago
- ProSolo, variant calling from single cell DNA-seq data, or: bulk backing vocals for single cell solos.☆21Updated 4 years ago
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆42Updated 3 years ago
- Using k-mers to call HLA alleles in RNA sequencing data☆23Updated 7 years ago
- Pairtree is a method for reconstructing cancer evolutionary history in individual patients, and analyzing intratumor genetic heterogeneit…☆40Updated last year
- ☆12Updated last year
- Callable Cancer Loci - assessment of sequencing coverage for actionable and pathogenic loci in cancer☆21Updated 4 years ago
- DRAGEN Tumor/Normal workflow post-processing☆23Updated 2 years ago
- Clonal and subclonal Copy Number Alteration quality check integrating somatic mutation☆24Updated last month
- Calib clusters barcode tagged paired-end reads based on their barcode and sequence similarity.☆39Updated 2 years ago
- Bedfile perturbation tool☆17Updated last month
- Workflow for ZINB-WaVE + DESeq2 intergration for single-cell RNA-seq☆31Updated 4 years ago
- Chromatin segmentation in R☆19Updated 7 years ago
- Analysis pipleine to model tumour clonal evolution from WGS data (driver annotation, quality control of copy number calls, subclonal and …☆19Updated 2 weeks ago
- Repo that aids in the detection of microsatellite instabilities (MSI) from sequencing data☆20Updated last year
- An Expectation-Maximization algorithm to infer mutational signatures☆25Updated 9 years ago
- Comprehensive Human Expressed SequenceS☆18Updated 4 months ago
- Multi-sample cancer phylogeny reconstruction☆36Updated 8 years ago
- Building the constrained coding regions (CCR) model☆16Updated 6 years ago
- This repository contains the code to run the ASCETS arm-level copy number events caller for targeted sequencing data. ASCETS produces arm…☆18Updated last year
- Allele-Specific Quantification of Structural Variations in Cancer Genomes☆18Updated 6 years ago
- CALDER (Cancer Analysis of Longitudinal Data through Evolutionary Reconstruction) reconstructs evolutionary trees from longitudinal bulk …☆15Updated last year
- Pipeline to call neoantigens from intron retention events derived from RNA-Seq data.☆28Updated 4 years ago
- Flexible Bayesian inference of mutational signatures☆37Updated 2 years ago
- R package specialized in HLA typing clustering and visualization based on specific similarity metrics☆14Updated 5 years ago
- BANDITS: Bayesian ANalysis of DIfferenTial Splicing☆18Updated last month
- iread☆25Updated 4 years ago
- Calculate and plot distributions of genomic ranges☆26Updated 6 months ago
- FREE Divergence Error-Correcting DNA Barcodes☆10Updated 7 years ago
- Differential ATAC-seq toolkit☆27Updated last year