koesterlab / microphaser
☆12Updated last year
Related projects: ⓘ
- ProSolo, variant calling from single cell DNA-seq data, or: bulk backing vocals for single cell solos.☆22Updated 3 years ago
- DRAGEN Tumor/Normal workflow post-processing☆21Updated last year
- Bedfile perturbation tool☆16Updated 9 months ago
- Correctly counting molecules using unique molecular identifiers (UMIs)☆9Updated 2 years ago
- Allele frequency filter app☆14Updated 2 years ago
- Simplifies parallel processing of DNA sequencing reads☆9Updated last year
- Converts 'MultiQC' Reports into Tidy Data Frames☆14Updated 5 months ago
- Building the constrained coding regions (CCR) model☆16Updated 5 years ago
- Workflow for ZINB-WaVE + DESeq2 intergration for single-cell RNA-seq☆30Updated 3 years ago
- R Interface to the NCBI SRA metadata☆23Updated 5 years ago
- Easy & parallel download of FASTQ files from public repositories (SRA, EGA, GDC)☆8Updated 2 years ago
- A JBrowse plugin for creating sashimi or junction style plots from RNA-seq data☆14Updated 3 years ago
- iread☆23Updated 3 years ago
- RCK: Reconstruction of clone- and haplotype-specific Cancer Karyotypes☆16Updated 4 years ago
- Callable Cancer Loci - assessment of sequencing coverage for actionable and pathogenic loci in cancer☆21Updated 3 years ago
- Two pass alignment for long reads☆20Updated 3 years ago
- CNAqc - Copy Number Alteration (CNA) Quality Check package☆17Updated last month
- maze: match visualizer☆9Updated 2 years ago
- Chromatin segmentation in R☆19Updated 6 years ago
- This repository contains the code to run the ASCETS arm-level copy number events caller for targeted sequencing data. ASCETS produces arm…☆14Updated 7 months ago
- Pipeline to call neoantigens from intron retention events derived from RNA-Seq data.☆28Updated 3 years ago
- iAnnotateSV is a Python library and command-line software toolkit to annotate and visualize structural variants detected from Next Genera…☆16Updated 2 weeks ago
- Clinical Variant Annotation Pipeline☆10Updated 4 years ago
- interactive plots for differential expression analysis☆25Updated 2 weeks ago
- The R package "sarlacc" contains a pipeline to analyse nanopore sequencing data. It trims adapter sequences, retrieves optional UMI's, cl…☆13Updated 5 years ago
- Repository for RecallME-v.0.1 a variant calling pipelines benchmarker and optimizer☆13Updated 9 months ago
- BANDITS: Bayesian ANalysis of DIfferenTial Splicing☆16Updated 10 months ago
- FunctionaL Omics Processing platform☆13Updated last month
- End-guided RNA assembler☆15Updated 11 months ago
- A tool for timing complex copy number gains in cancer.☆11Updated last month