Alternatives and similar repositories for popalign:

Users that are interested in popalign are comparing it to the libraries listed below

• Teichlab / GPfates
  ☆19Updated 7 years ago
• liulab-dfci / lisa
  epigenome analysis to rank transcription factors
  ☆13Updated 5 years ago
• mikelove / zinbwave-deseq2
  Workflow for ZINB-WaVE + DESeq2 intergration for single-cell RNA-seq
  ☆31Updated 4 years ago
• CostelloLab / GSEA-InContext
  Gene Set Enrichment Analysis in Python
  ☆11Updated 6 years ago
• klarman-cell-observatory / scSVA
  Single-cell Scalable Visualization and Analytics
  ☆25Updated 5 years ago
• csoneson / rna_velocity_quant
  Evaluation of the effect of quantification choices on RNA velocity estimates
  ☆27Updated 3 years ago
• fmicompbio / eisaR
  Exon-Intron Split Analysis (EISA) in R
  ☆16Updated last month
• ncbi / scPopCorn
  A python tool to do comparative analysis of mulitple single cell datasets.
  ☆21Updated 5 years ago
• satijalab / scChromHMM
  🧬 🦀 A fast and efficient tool to perform a genome wide Single cell Chromatin State Analysis using multimodal histone modification data.…
  ☆26Updated 3 years ago
• statbiophys / HLAGuessr
  ☆17Updated last month
• edsgard / scphaser
  R package for haplotype phasing using single-cell RNA-seq data
  ☆13Updated 7 years ago
• pachterlab / RMEJLBASBMP_2024
  Repository for the paper "The impact of package selection and versioning on single-cell RNA-seq analysis"
  ☆18Updated 3 weeks ago
• jessemzhang / tn_test
  post-clustering differential expression test
  ☆35Updated 5 years ago
• vanallenlab / retained-intron-neoantigen-pipeline
  Pipeline to call neoantigens from intron retention events derived from RNA-Seq data.
  ☆28Updated 4 years ago
• broadinstitute / mix_seq_ms
  Code associated with MIX-seq manuscript
  ☆14Updated 4 years ago
• nghiavtr / ISOP
  Isoform-level expression patterns in single-cell RNA-sequencing data
  ☆11Updated last year
• pachterlab / NYMP_2018
  ☆28Updated 6 years ago
• cole-trapnell-lab / Scribe
  Regulatory networks with Direct Information
  ☆16Updated 5 years ago
• davemcg / scEiaD
  Snakefile-based process to turn 1.4 million ocular cells into a unified meta-atlas
  ☆25Updated last year
• yuchaojiang / SCALE
  Allele-Specific Expression by Single-Cell RNA Sequencing
  ☆28Updated 4 years ago
• klarman-cell-observatory / scPlot
  Single cell interactive plotting tools
  ☆23Updated 4 years ago
• jacobhepkema / scover
  scover
  ☆23Updated last year
• rajanil / msCentipede
  A hierarchical multiscale model for inferring transcription factor binding from chromatin accessibility data.
  ☆26Updated 8 years ago
• chlbaron / GateID
  Cell type purification by single-cell transcriptome-trained sorting
  ☆14Updated 5 years ago
• caleblareau / immune_cell_signature_genes
  Repository for signature genes from Immune Cell Atlas
  ☆18Updated 5 years ago
• flo-compbio / xlmhg
  XL-mHG: A Semiparametric Test for Enrichment in Ranked Lists.
  ☆13Updated 2 years ago
• klarman-cell-observatory / perturbseq
  Perturb-seq analysis package
  ☆14Updated 10 months ago
• francescojm / ADAM
  Adaptive Daisy Model to discriminate core-fitness/context-specific essential genes in large scale CRISPR-Cas9 screens
  ☆22Updated 5 years ago
• igrabski / scRNAseq-cell-type
  Probabilistic gene expression barcodes for cell type annotation
  ☆25Updated 2 years ago
• kieranrcampbell / phenopath
  Genomic trajectories (pseudotimes) in the presence of heterogenous environmental and genetic backgrounds
  ☆10Updated 5 years ago