Jinke-Liu / Distance-of-distance-tSNE
☆10Updated last year
Alternatives and similar repositories for Distance-of-distance-tSNE:
Users that are interested in Distance-of-distance-tSNE are comparing it to the libraries listed below
- This Python package will allow you to replicate the experiments from our research on applying Optimal Transport as a similarity metric in…☆38Updated 2 years ago
- ☆20Updated 3 years ago
- generalized principal component analysis (GLM-PCA) implemented in python☆60Updated 4 years ago
- Picasso: a methods for embedding points in 2D in a way that respects distances while fitting a user-specified shape.☆70Updated 9 months ago
- pyGPCCA - python GPCCA: Generalized Perron Cluster Cluster Analysis package to coarse-grain reversible and non-reversible Markov state mo…☆21Updated 3 weeks ago
- Gaussian process regression package for counts data with negative binomial and zero-inflated negative binomial likelihoods☆21Updated 2 months ago
- ☆10Updated 3 years ago
- ☆33Updated 3 years ago
- ☆16Updated 3 years ago
- Create PyTorch Datasets from AnnData☆20Updated last month
- Creating multi-resolution embeddings and clusters from high dimensional data☆53Updated 6 months ago
- Dynamical systems methods for RNA velocity analysis☆24Updated 3 years ago
- Alignment of spatial genomics data using deep Gaussian processes☆27Updated 2 years ago
- Archetypal Analysis network (AAnet)☆33Updated 2 months ago
- Parallel opt-SNE implementation with Python wrapper☆37Updated 2 years ago
- Deep exponential families for single-cell data.☆21Updated 5 months ago
- A package for making MuE observation models in Edward2.☆13Updated 3 years ago
- An object oriented python library for topological data analysis of high-throughput single-cell RNA-seq data☆7Updated 7 years ago
- ☆14Updated 2 years ago
- A Python package for gene network analysis☆32Updated 2 years ago
- HiDeF (Hierarchical community Decoding Framework)☆14Updated last year
- Single-cell multi-omics integration using Optimal Transport☆43Updated 7 months ago
- This is the repository for the single-cell transcriptomics application of the Deep Generative Decoder (DGD), developed by the Krogh group…☆14Updated 8 months ago
- Pandas API for multiple Gene Set Enrichment Analysis implementations in Python (GSEApy, cudaGSEA, GSEA)☆14Updated 2 years ago
- A quantitative framework for evaluating data structure preservation by dimensionality reduction techniques☆15Updated 3 years ago
- Learning motif contributions to cell transitions using sequence features and graphs.☆28Updated 7 months ago
- Conditional Autoencoders for Multiplexed Pixel Analysis☆15Updated 2 years ago
- SpatialCorr: Identify gene sets with spatially varying correlation☆16Updated last year
- Nonnegative spatial factorization for multivariate count data☆58Updated last year
- Regulatory networks with Direct Information in python☆40Updated 2 years ago