Alternatives and similar repositories for Distance-of-distance-tSNE

Users that are interested in Distance-of-distance-tSNE are comparing it to the libraries listed below

• msmdev / pyGPCCA
  pyGPCCA - python GPCCA: Generalized Perron Cluster Cluster Analysis package to coarse-grain reversible and non-reversible Markov state mo…
  ☆21Updated last month
• cantinilab / OT-scOmics
  This Python package will allow you to replicate the experiments from our research on applying Optimal Transport as a similarity metric in…
  ☆38Updated 2 years ago
• lilab-bcb / nmf-torch
  ☆11Updated 2 weeks ago
• mvinyard / torch-adata
  Create PyTorch Datasets from AnnData
  ☆20Updated 2 months ago
• nitzanlab / scPrisma
  scPrisma is a spectral analysis method, for pseudotime reconstruction, informative genes inference, filtering, and enhancement of underly…
  ☆17Updated last year
• ManchesterBioinference / GPcounts
  Gaussian process regression package for counts data with negative binomial and zero-inflated negative binomial likelihoods
  ☆21Updated 2 months ago
• dawe / schist
  An interface for Nested Stochastic Block Model for single cell analysis
  ☆35Updated 2 months ago
• andrewcharlesjones / spatial-alignment
  Alignment of spatial genomics data using deep Gaussian processes
  ☆27Updated 2 years ago
• canzarlab / JVis-learn
  ☆20Updated 3 years ago
• pachterlab / picasso
  Picasso: a methods for embedding points in 2D in a way that respects distances while fitting a user-specified shape.
  ☆70Updated 10 months ago
• mbernste / SpatialCorr
  SpatialCorr: Identify gene sets with spatially varying correlation
  ☆17Updated last year
• willtownes / glmpca-py
  generalized principal component analysis (GLM-PCA) implemented in python
  ☆60Updated 4 years ago
• pachterlab / CBP_2021
  ☆16Updated 3 years ago
• shangll123 / SpatialPCA
  Spatially aware dimension reduction for spatial transcriptomics.
  ☆48Updated last month
• theislab / graphcompass
  GraphCompass: Graph Comparison Tools for Differential Analyses in Spatial Systems
  ☆35Updated last month
• willtownes / nsf-paper
  Nonnegative spatial factorization for multivariate count data
  ☆59Updated last year
• cbg-ethz / scDEF
  Deep exponential families for single-cell data.
  ☆21Updated 6 months ago
• jkobject / scDataLoader
  a dataloader to work with large single cell datasets from lamindb
  ☆24Updated last week
• calico / velodyn
  Dynamical systems methods for RNA velocity analysis
  ☆24Updated 3 years ago
• fanzheng10 / HiDeF
  HiDeF (Hierarchical community Decoding Framework)
  ☆14Updated last year
• PMBio / SpatialDE
  Test genes for Spatial Variation
  ☆14Updated 4 months ago
• zsteve / StationaryOT
  Dynamic inference from single-cell snapshots by optimal transport
  ☆19Updated last year
• caravagnalab / congas
  A set of Pyro models and functions to infer CNA from scRNA-seq data
  ☆11Updated last year
• VeraPancaldiLab / tysserand
  Fast reconstruction of spatial networks from bioimages.
  ☆25Updated 3 weeks ago
• theislab / inVAE
  Invariant Representation learning
  ☆15Updated 10 months ago
• theislab / campa
  Conditional Autoencoders for Multiplexed Pixel Analysis
  ☆15Updated 2 years ago
• theislab / mubind
  Learning motif contributions to cell transitions using sequence features and graphs.
  ☆28Updated 8 months ago
• klarman-cell-observatory / PowerAnalysisForSpatialOmics
  ☆26Updated 7 months ago
• scverse / ecosystem-packages
  Registry for scverse ecosystem packages (https://scverse.org/packages/#ecosystem)
  ☆22Updated this week
• dylkot / scsim
  Simulate single-cell RNA-SEQ data using the Splatter statistical framework but implemented in python. In addition, simulate doublet cells…
  ☆27Updated 3 years ago