Consensus peaks of chromatin accessibility in the human genome
☆19Oct 8, 2026Updated 3 weeks ago
Alternatives and similar repositories for cPeaks
Users that are interested in cPeaks are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- single-cell Contamination Detection and Correction☆19Jan 15, 2025Updated last year
- Scalable sequence-informed embedding of single-cell ATAC-seq data with CellSpace☆42Jan 11, 2025Updated last year
- Batch alignment of single-cell transcriptomics data using deep metric learning☆26Feb 5, 2024Updated 2 years ago
- ☆15May 1, 2026Updated 6 months ago
- MapQC - a metric for the evaluation of single-cell query-to-reference mappings☆12Updated this week
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- A scalable method to infer fate specific gene regulatory network from single cell gene expression data☆10Jan 21, 2025Updated last year
- Code for scKINETICS (ISMB 2023)☆22Oct 23, 2023Updated 3 years ago
- Repository for reproducing figures and tables for the study titled, "Mapping spatial organization and genetic cell state regulators to ta…☆10Sep 5, 2024Updated 2 years ago
- Probability Model of Accessible Chromatin of Single cells☆11Aug 14, 2026Updated 2 months ago
- scNOVA : Single-Cell Nucleosome Occupancy and genetic Variation Analysis☆12Jul 29, 2023Updated 3 years ago
- Codebase for PRESCIENT (Potential eneRgy undErlying Single Cell gradIENTs) for generative modeling of single-cell time-series.☆57Jan 20, 2025Updated last year
- ☆13Jan 27, 2025Updated last year
- Reproducibility of results/figures from scvi-hub paper☆15Apr 16, 2025Updated last year
- Notebooks for reproducing figures in the Spectra paper☆13Jun 7, 2023Updated 3 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Analysis code for the TAP-seq manuscript.☆13Jun 25, 2021Updated 5 years ago
- ☆12Dec 10, 2025Updated 10 months ago
- ☆16Sep 1, 2023Updated 3 years ago
- CREsted is a Python package for training sequence-based deep learning models on scATAC-seq data, for capturing enhancer code and for desi…☆84Updated this week
- ☆13Feb 2, 2023Updated 3 years ago
- R package for single-cell comparative regulatory analysis☆13Jun 26, 2021Updated 5 years ago
- Analysis of imbalanced data and its impacts in a scRNA-seq integration setting☆31Mar 7, 2025Updated last year
- Single Cell Pretrained Regulatory network INference from Transcripts☆11Sep 17, 2024Updated 2 years ago
- SIMBA: SIngle-cell eMBedding Along with features☆67Oct 16, 2024Updated 2 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- GIANT (Gene-based data Integration and ANalysis Technique) is a method for large-scale joint analyses of atlas-level single cell data.☆14Jun 13, 2023Updated 3 years ago
- ☆13Nov 20, 2023Updated 2 years ago
- Tool to parse fasterq/fastq dump outputs for SRA scRNAseq data☆19Mar 7, 2024Updated 2 years ago
- Paired Insertion Counting for snATAC-seq data☆20Aug 17, 2026Updated 2 months ago
- ☆14Nov 3, 2023Updated 3 years ago
- A single-cell analysis toolkit to jointly analyze samples from distinct conditions☆37Apr 2, 2025Updated last year
- Bayesian model for RNA velocity estimation of periodic manifolds☆36Jun 25, 2024Updated 2 years ago
- ☆36Jul 20, 2026Updated 3 months ago
- ☆71Apr 22, 2026Updated 6 months ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- ☆13Jul 9, 2026Updated 3 months ago
- scTriangulate is a Python package to mix-and-match conflicting clustering results in single cell analysis and generate reconciled cluster…☆41Mar 30, 2026Updated 7 months ago
- ☆20Aug 23, 2025Updated last year
- Perturbation-response Score (PS) analysis is a method to quantify diverse perturbation responses and discover novel biological insights i…☆19Apr 20, 2024Updated 2 years ago
- ☆17Jul 12, 2024Updated 2 years ago
- Code, data and analysis for moslin.☆15Oct 7, 2024Updated 2 years ago
- MarcoPolo is a clustering-free approach to the exploration of bimodally expressed genes along with group information in single-cell RNA-s…☆21Nov 17, 2024Updated last year