Alternatives and similar repositories for cPeaks

Users that are interested in cPeaks are comparing it to the libraries listed below

• mcgilldinglab / UNAGI
  UNAGI: deep generative AI for virtual disease and unsuperivsed in-silico perturbations.
  ☆42Updated 2 weeks ago
• madilabcode / scNET
  ☆58Updated 2 months ago
• WanluLiuLab / scAtlasVAE
  ☆39Updated 5 months ago
• Roy-lab / scMTNI
  ☆30Updated 4 months ago
• biomed-AI / CellFM
  ☆87Updated 3 months ago
• cliffren / PENCIL
  PENCIL is a novel tool for singlecell data analysis to identify phenotype associated subpopulations and informative genes simultaneously.
  ☆28Updated last year
• hsmaan / Iniquitate
  Analysis of imbalanced data and its impacts in a scRNA-seq integration setting
  ☆30Updated 8 months ago
• KlugerLab / GeneTrajectory-python
  Python implementation of Gene Trajectory
  ☆30Updated last year
• mcgilldinglab / CellAgentChat
  Python agent-based model tool for inference, visualization and analysis of cell-cell communication from single-cell data
  ☆33Updated this week
• wallet-maker / cytopus
  Single cell omics biology annotations
  ☆50Updated 7 months ago
• YDaiLab / scRegulate
  Python Toolkit for Transcription Factor Activity Inference and Clustering of scRNA-seq Data
  ☆20Updated this week
• data2intelligence / CytoSig_prediction
  Example of run CytoSig and reproduce prediction results on bulk and single-cell cohorts
  ☆14Updated 2 years ago
• MarioniLab / hbca
  Code used to process the data of the HBCA project
  ☆32Updated last year
• theislab / scTab
  ☆61Updated last year
• WPZgithub / CEFCON
  Deciphering driver regulators of cell fate decisions from single-cell RNA-seq data
  ☆25Updated last year
• kunwang34 / PhyloVelo
  PhyloVelo, Phylogeny-based transcriptomic velocity of single cells
  ☆43Updated 2 months ago
• Genentech / pascient
  ☆17Updated 7 months ago
• EngreitzLab / scE2G
  Pipeline to run scE2G
  ☆30Updated last month
• JiangBioLab / DeepTalk
  Deciphering cell-cell communication from spatially resolved transcriptomic data at single-cell resolution with subgraph-based attentional…
  ☆26Updated last year
• LaughneyLab / ContactTracing_tutorial
  ☆17Updated last year
• GuangyuWangLab2021 / cellDancer
  Predict RNA velocity through deep learning
  ☆70Updated last year
• immunogenomics / RA_Atlas_CITEseq
  RA Synovial Single-cell Multimodal Cell Atlas
  ☆19Updated last year
• theislab / cross_system_integration
  ☆13Updated 2 months ago
• perturblib / perturblib
  ☆28Updated 5 months ago
• Teichlab / snp2cell
  cell type specific, trait-associated gene regulation
  ☆29Updated 8 months ago
• huidongchen / simba
  SIMBA: SIngle-cell eMBedding Along with features
  ☆20Updated last year
• kaizhang / single-cell-benchmark
  ☆11Updated 2 years ago
• Teddy-XiongGZ / DeepGSEA
  ☆17Updated last year
• xiaoyeye / TFvelo
  ☆45Updated last year
• bowang-lab / DeepVelo
  ☆46Updated last year