Consensus peaks of chromatin accessibility in the human genome
☆16Dec 1, 2025Updated 3 months ago
Alternatives and similar repositories for cPeaks
Users that are interested in cPeaks are comparing it to the libraries listed below
Sorting:
- ☆17Updated this week
- scNOVA : Single-Cell Nucleosome Occupancy and genetic Variation Analysis☆11Jul 29, 2023Updated 2 years ago
- Single Cell Pretrained Regulatory network INference from Transcripts☆11Sep 17, 2024Updated last year
- Example of run CytoSig and reproduce prediction results on bulk and single-cell cohorts☆14Jul 5, 2023Updated 2 years ago
- GIANT (Gene-based data Integration and ANalysis Technique) is a method for large-scale joint analyses of atlas-level single cell data.☆14Jun 13, 2023Updated 2 years ago
- A single-cell analysis toolkit to jointly analyze samples from distinct conditions☆34Apr 2, 2025Updated 11 months ago
- ☆16Sep 1, 2023Updated 2 years ago
- Code, data and analysis for moslin.☆15Oct 7, 2024Updated last year
- ☆17Jul 12, 2024Updated last year
- ☆17Sep 16, 2024Updated last year
- Scalable sequence-informed embedding of single-cell ATAC-seq data with CellSpace☆41Jan 11, 2025Updated last year
- Detection of PatIent-Level distances from single cell genomics and pathomics data with Optimal Transport (PILOT)☆25Feb 12, 2026Updated 3 weeks ago
- MarcoPolo is a clustering-free approach to the exploration of bimodally expressed genes along with group information in single-cell RNA-s…☆20Nov 17, 2024Updated last year
- ☆19Jan 16, 2024Updated 2 years ago
- Code for scKINETICS (ISMB 2023)☆22Oct 23, 2023Updated 2 years ago
- Batch alignment of single-cell transcriptomics data using deep metric learning☆22Feb 5, 2024Updated 2 years ago
- ☆20May 30, 2022Updated 3 years ago
- ☆92Aug 12, 2024Updated last year
- Codebase for PRESCIENT (Potential eneRgy undErlying Single Cell gradIENTs) for generative modeling of single-cell time-series.☆52Jan 20, 2025Updated last year
- This repository contains scripts to identify healthy and malignant cells from scRNAseq with CloneTracer and process data from Optimized 1…☆26Oct 17, 2024Updated last year
- ☆60Jan 9, 2026Updated last month
- ☆60Apr 5, 2024Updated last year
- SIMBA: SIngle-cell eMBedding Along with features☆66Oct 16, 2024Updated last year
- Bayesian model for RNA velocity estimation of periodic manifolds☆35Jun 25, 2024Updated last year
- Analysis of imbalanced data and its impacts in a scRNA-seq integration setting☆31Mar 7, 2025Updated last year
- Aligning gene expression trajectories of single-cell reference and query systems☆83Aug 10, 2025Updated 6 months ago
- Supporting data files and code for the publication by Shilts et al.☆31Aug 28, 2022Updated 3 years ago
- Python implementation of Milo for differential abundance testing on KNN graph☆81Feb 17, 2025Updated last year
- Vector representations of gene co-expression in single cell RNAseq.☆36Nov 8, 2025Updated 4 months ago
- R package developed for single-cell RNA-seq analysis. It was designed using the Seurat framework, and offers existing and novel single-ce…☆33Nov 28, 2025Updated 3 months ago
- ☆33Jan 23, 2025Updated last year
- scDREAMER for atlas-level integration of single-cell datasets using deep generative model paired with adversarial classifier☆48Apr 12, 2024Updated last year
- UCE is a zero-shot foundation model for single-cell gene expression data☆245Feb 26, 2026Updated last week
- ☆10Dec 4, 2023Updated 2 years ago
- R package to analyze single cell DNA sequencing data.☆10Jan 28, 2026Updated last month
- A python implementation of scran computeSumFactors: normalization by deconvolution for single-cell RNA-sequencing☆34Nov 4, 2023Updated 2 years ago
- ☆13Feb 20, 2026Updated 2 weeks ago
- Weakly supervised learning uncovers phenotypic signatures in single-cell data☆38Dec 17, 2025Updated 2 months ago
- ☆36Apr 16, 2025Updated 10 months ago