A novel method for single-cell diagonal integration: scConfluence
☆27Nov 3, 2025Updated 7 months ago
Alternatives and similar repositories for scconfluence
Users that are interested in scconfluence are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Learning cell fate landscapes from spatial transcriptomics using Fused Gromov-Wasserstein☆27Oct 21, 2025Updated 7 months ago
- Molecular interactions inference from single-cell multi-omics data☆31May 7, 2026Updated last month
- single cell foundation model for Gene network inference and more☆20May 20, 2026Updated 3 weeks ago
- Co-accessibility network from single-cell ATAC-seq data. Python code with AnnData, based on Cicero algorithm.☆35May 23, 2026Updated 3 weeks ago
- Single Cell Pretrained Regulatory network INference from Transcripts☆11Sep 17, 2024Updated last year
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Python package for the ICML 2022 paper "Unsupervised Ground Metric Learning Using Wasserstein Singular Vectors".☆10Sep 2, 2024Updated last year
- ☆14Jan 25, 2023Updated 3 years ago
- Learning stochastic dynamics from snapshots through regularized unbalanced optimal transport (ICLR'25 oral)☆35Dec 10, 2025Updated 6 months ago
- This Python package will allow you to replicate the experiments from our research on applying Optimal Transport as a similarity metric in…☆43Feb 3, 2023Updated 3 years ago
- Scatterbar - data visualization for proportional data across many spatially resolved coordinates☆12Mar 3, 2025Updated last year
- Scalable framework for comparing metric measure spaces with up to 1M points.☆16Apr 6, 2021Updated 5 years ago
- Python tool for alignment of spatial transcriptomics (ST) data using diffeomorphic metric mapping☆99Dec 11, 2023Updated 2 years ago
- ☆16Sep 29, 2023Updated 2 years ago
- Single-cell multi-omics integration using Optimal Transport☆53Aug 14, 2025Updated 10 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Probabilistic Alignment of Spatial Transcriptomics Experiments v.2☆42Mar 2, 2025Updated last year
- SpatialGlue is a novel deep learning methods for spatial multi-omics data integration.☆91Jun 24, 2024Updated last year
- ☆42Jun 3, 2026Updated last week
- SuperCell for Cytometry data☆13Oct 14, 2025Updated 8 months ago
- Global Waddington-OT☆23Mar 25, 2025Updated last year
- comseg☆24Feb 6, 2025Updated last year
- ☆15Aug 17, 2023Updated 2 years ago
- ☆63Jul 23, 2024Updated last year
- Cytofin-an R package for CyTOF data integration☆12Jan 13, 2022Updated 4 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- python API to the CoGAPS NMF package☆21May 19, 2025Updated last year
- ChIP-seq peak caller for reads mapped to a graph-based reference genome☆26Aug 17, 2024Updated last year
- Code for the paper: "Abide by the Law and Follow the Flow: Conservation Laws for Gradient Flows".☆12Feb 24, 2024Updated 2 years ago
- ☆12Nov 13, 2024Updated last year
- Dynamical information enables inference of gene regulation at single-cell scale☆12Jun 9, 2025Updated last year
- Code & utilities for the manuscript "Lineage Recording Reveals the Phylodynamics, Plasticity and Paths of Tumor Evolution"☆14May 27, 2023Updated 3 years ago
- ☆44May 11, 2026Updated last month
- An optimal transport-based algorithm for inferring cell trajectories of spatial transcriptomics.☆42Mar 30, 2025Updated last year
- Probabilistic factor models for spatially correlated data. Includes nonnegative and real-valued versions.☆19Dec 5, 2024Updated last year
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Fusion strategies to build multimodal predictors for the prediction of immunotherapy response in non-small cell lung cancer☆15Jan 13, 2025Updated last year
- Reworked clustering metrics for assessing performance in imbalanced settings☆18Jun 3, 2024Updated 2 years ago
- Out-of-Core Principal Component Analysis☆19Dec 25, 2017Updated 8 years ago
- Integrative and Reference-Informed Spatial Domain Detection for Spatial Transcriptomics☆45Feb 19, 2026Updated 3 months ago
- reComBat package to correct batch effects☆13Jul 17, 2023Updated 2 years ago
- Probabilistic Alignment of Spatial Transcriptomics Experiments☆102Feb 26, 2025Updated last year
- Implementation of our Delaunay based rough/multi-stroke sketches simplification work☆12Jan 18, 2020Updated 6 years ago