ConsensusTME Gene Sets and R Script
☆40Jun 6, 2024Updated last year
Alternatives and similar repositories for ConsensusTME
Users that are interested in ConsensusTME are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆21Apr 16, 2024Updated 2 years ago
- Automated, probabilistic assignment of cell types in scRNA-seq data☆213Jan 9, 2023Updated 3 years ago
- a R package to identify neoantigens from NGS data☆18Jun 29, 2017Updated 8 years ago
- Detecting cancer subtypes with machine learning.☆10Feb 5, 2020Updated 6 years ago
- ABSOLUTE source code that works with allelic copy ratio on both hg19 and hg38☆14Nov 5, 2025Updated 5 months ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- A unified interface to immune deconvolution methods (CIBERSORT, EPIC, quanTIseq, TIMER, xCell, MCPcounter) and mouse deconvolution method…☆538Apr 6, 2026Updated 3 weeks ago
- Transcriptomic classifier for Muscle-Invasive Bladder Cancer☆15Oct 5, 2022Updated 3 years ago
- An R package for classification of immune subtypes, in cancer, using gene expression data.☆48Mar 6, 2026Updated last month
- Calculating Tumor microenvironment score☆29Jan 20, 2023Updated 3 years ago
- CDSeq R Package☆21Jul 1, 2025Updated 10 months ago
- Code accompanying "The evolutionary history of 2,658 cancers", Nature 578, 122–128 (2020)☆17Jan 15, 2020Updated 6 years ago
- Validating glioblastoma immune cell immunohistochemsitry using computational deconvolution of TCGA tumors☆14Jul 10, 2019Updated 6 years ago
- Code for the paper on the ICR immune signatures and prognostic significance pan-cancer (TCGA)☆10Jul 22, 2020Updated 5 years ago
- Workshop for CNV analysis with Bioconductor☆17Jan 6, 2025Updated last year
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Dissecting the effects of DNA copy number variations on transcriptional programs at single-cell resolution☆14Feb 13, 2026Updated 2 months ago
- 🦀 Tumor growth simulation in C++/R☆20Dec 30, 2025Updated 4 months ago
- Landscape Single Cell Entropy☆23Aug 24, 2020Updated 5 years ago
- Explore the cancer relevance of your gene list☆54Dec 17, 2025Updated 4 months ago
- ☆38Updated this week
- python stuff I use☆20Feb 16, 2026Updated 2 months ago
- GESTALT processing pipeline for barcodes captured with single-cell RNA sequencing☆13Jan 26, 2020Updated 6 years ago
- ☆25Aug 1, 2022Updated 3 years ago
- A curated list of bioinformatics bench-marking papers and resources.☆15Nov 27, 2019Updated 6 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- ASCAT R package☆199Feb 12, 2026Updated 2 months ago
- Integrating LASSO and bootstrapping algorithm to find best prognostic or predictive biomarkers☆21Oct 12, 2022Updated 3 years ago
- IOBR is an R package to perform comprehensive analysis of tumor microenvironment and signatures for immuno-oncology. https://iobr.github.…☆288Updated this week
- ☆20Jan 16, 2026Updated 3 months ago
- Code for spatial subclone paper☆18Jan 23, 2025Updated last year
- Single Cell Genomics for Enhancing Cell Composition Inference from Bulk Genomics Data☆21Jul 13, 2021Updated 4 years ago
- Analyses for Manuscript "Sensitive detection of renal cell carcinoma using plasma and urine cell-free DNA methylomes"☆12Aug 4, 2020Updated 5 years ago
- Genomic trajectories (pseudotimes) in the presence of heterogenous environmental and genetic backgrounds☆12Mar 21, 2019Updated 7 years ago
- Probabilistic pseudotime for single-cell RNA-seq data☆11Oct 6, 2017Updated 8 years ago
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- Efficiently compute robust markers across single-cell datasets☆13Apr 21, 2021Updated 5 years ago
- ☆15Feb 28, 2022Updated 4 years ago
- Calculation of distance metrics for matrices☆26Mar 1, 2019Updated 7 years ago
- Reconstruction of spatial context of gene expression with optimal transport☆11Mar 14, 2019Updated 7 years ago
- Brief tutorial for using Snakemake to create and submit jobs on a HPC cluster.☆15Mar 22, 2022Updated 4 years ago
- A Weighted Exact Test for Mutually Exclusive Mutations in Cancer☆21Sep 30, 2018Updated 7 years ago
- Reproducing the experiments in the paper☆11Dec 14, 2021Updated 4 years ago