ConsensusTME Gene Sets and R Script
☆40Jun 6, 2024Updated last year
Alternatives and similar repositories for ConsensusTME
Users that are interested in ConsensusTME are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆21Apr 16, 2024Updated last year
- Automated, probabilistic assignment of cell types in scRNA-seq data☆213Jan 9, 2023Updated 3 years ago
- a R package to identify neoantigens from NGS data☆18Jun 29, 2017Updated 8 years ago
- Detecting cancer subtypes with machine learning.☆10Feb 5, 2020Updated 6 years ago
- ABSOLUTE source code that works with allelic copy ratio on both hg19 and hg38☆13Nov 5, 2025Updated 5 months ago
- NordVPN Special Discount Offer • AdSave on top-rated NordVPN 1 or 2-year plans with secure browsing, privacy protection, and support for for all major platforms.
- A unified interface to immune deconvolution methods (CIBERSORT, EPIC, quanTIseq, TIMER, xCell, MCPcounter) and mouse deconvolution method…☆533Updated this week
- Transcriptomic classifier for Muscle-Invasive Bladder Cancer☆15Oct 5, 2022Updated 3 years ago
- An R package for classification of immune subtypes, in cancer, using gene expression data.☆48Mar 6, 2026Updated last month
- Calculating Tumor microenvironment score☆29Jan 20, 2023Updated 3 years ago
- CDSeq R Package☆21Jul 1, 2025Updated 9 months ago
- Code accompanying "The evolutionary history of 2,658 cancers", Nature 578, 122–128 (2020)☆17Jan 15, 2020Updated 6 years ago
- Validating glioblastoma immune cell immunohistochemsitry using computational deconvolution of TCGA tumors☆14Jul 10, 2019Updated 6 years ago
- Code for the paper on the ICR immune signatures and prognostic significance pan-cancer (TCGA)☆10Jul 22, 2020Updated 5 years ago
- Workshop for CNV analysis with Bioconductor☆17Jan 6, 2025Updated last year
- Wordpress hosting with auto-scaling on Cloudways • AdFully Managed hosting built for WordPress-powered businesses that need reliable, auto-scalable hosting. Cloudways SafeUpdates now available.
- Dissecting the effects of DNA copy number variations on transcriptional programs at single-cell resolution☆13Feb 13, 2026Updated last month
- 🦀 Tumor growth simulation in C++/R☆20Dec 30, 2025Updated 3 months ago
- Landscape Single Cell Entropy☆21Aug 24, 2020Updated 5 years ago
- Explore the cancer relevance of your gene list☆53Dec 17, 2025Updated 3 months ago
- ☆38Oct 3, 2025Updated 6 months ago
- python stuff I use☆20Feb 16, 2026Updated last month
- GESTALT processing pipeline for barcodes captured with single-cell RNA sequencing☆13Jan 26, 2020Updated 6 years ago
- ☆25Aug 1, 2022Updated 3 years ago
- A curated list of bioinformatics bench-marking papers and resources.☆15Nov 27, 2019Updated 6 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting with the flexibility to host WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Cloudways by DigitalOcean.
- ASCAT R package☆199Feb 12, 2026Updated 2 months ago
- Integrating LASSO and bootstrapping algorithm to find best prognostic or predictive biomarkers☆21Oct 12, 2022Updated 3 years ago
- IOBR is an R package to perform comprehensive analysis of tumor microenvironment and signatures for immuno-oncology. https://iobr.github.…☆284Updated this week
- ☆20Jan 16, 2026Updated 2 months ago
- Efficiently compute robust markers across single-cell datasets☆12Apr 21, 2021Updated 4 years ago
- Code for spatial subclone paper☆18Jan 23, 2025Updated last year
- Single Cell Genomics for Enhancing Cell Composition Inference from Bulk Genomics Data☆20Jul 13, 2021Updated 4 years ago
- Genomic trajectories (pseudotimes) in the presence of heterogenous environmental and genetic backgrounds☆12Mar 21, 2019Updated 7 years ago
- Analyses for Manuscript "Sensitive detection of renal cell carcinoma using plasma and urine cell-free DNA methylomes"☆12Aug 4, 2020Updated 5 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting with the flexibility to host WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Cloudways by DigitalOcean.
- Probabilistic pseudotime for single-cell RNA-seq data☆11Oct 6, 2017Updated 8 years ago
- ☆15Feb 28, 2022Updated 4 years ago
- Calculation of distance metrics for matrices☆26Mar 1, 2019Updated 7 years ago
- Reconstruction of spatial context of gene expression with optimal transport☆11Mar 14, 2019Updated 7 years ago
- Brief tutorial for using Snakemake to create and submit jobs on a HPC cluster.☆15Mar 22, 2022Updated 4 years ago
- A Weighted Exact Test for Mutually Exclusive Mutations in Cancer☆21Sep 30, 2018Updated 7 years ago
- countsimQC - Compare characteristic features of count data sets☆30Feb 7, 2026Updated 2 months ago