Calculation of distance metrics for matrices
☆26Mar 1, 2019Updated 7 years ago
Alternatives and similar repositories for dismay
Users that are interested in dismay are comparing it to the libraries listed below
Sorting:
- Source code and data supporting "Evaluating measures of association for single-cell transcriptomics"☆16Feb 25, 2019Updated 7 years ago
- distinct: a method for differential analyses via hierarchical permutation tests☆11Dec 4, 2023Updated 2 years ago
- R package for detection of cell-cell interaction using Non-negative Tensor Decomposition☆34Jun 19, 2025Updated 8 months ago
- R package for distinguishing cells from background barcodes in droplet-based single-cell RNA-seq data☆11Apr 19, 2023Updated 2 years ago
- BioC2020: Where Software and Biology Connect☆12Mar 15, 2023Updated 2 years ago
- This repository contains code for the evaluation of epithelial-to-mesenchymal transition states in cancer.☆13Jan 24, 2023Updated 3 years ago
- ☆11May 30, 2023Updated 2 years ago
- ☆17Sep 28, 2022Updated 3 years ago
- ☆12Sep 2, 2024Updated last year
- Robust Integration of Single-Cell Cytometry Datasets☆32Aug 29, 2025Updated 6 months ago
- Gene regulatory network reconstruction from pseudotemporal single-cell gene expression data☆11Jul 11, 2024Updated last year
- represent each cell in UMAP plots as a pie chart☆16Sep 27, 2021Updated 4 years ago
- ☆47Apr 18, 2020Updated 5 years ago
- ☆12Oct 29, 2025Updated 4 months ago
- An R package to analyze single-cell V(D)J data☆28Nov 13, 2023Updated 2 years ago
- A library for the deconvolution of bulk cell samples using single-cell RNA expression data.☆23Nov 3, 2021Updated 4 years ago
- Collection of functions created and/or curated to aid in the visualization and analysis of single-cell data using R.☆16Dec 8, 2021Updated 4 years ago
- Cell type matching in single-cell RNA-sequencing data using FR-Match☆19Feb 16, 2026Updated 2 weeks ago
- Flexible, probablistic metrics for quality control of scRNA-seq data☆21Jan 4, 2023Updated 3 years ago
- Detect doublets in single-cell RNA-seq data☆86Jul 3, 2019Updated 6 years ago
- Simplified script for applying the t-SNE diff method on high parameter flow cytometry data☆11Oct 31, 2023Updated 2 years ago
- The Tomographer package implements the mathematical spatial image reconstruction of any set of read counts as described in the following …☆11May 15, 2021Updated 4 years ago
- CellAnn☆12Nov 3, 2023Updated 2 years ago
- Single Cell Genomics for Enhancing Cell Composition Inference from Bulk Genomics Data☆20Jul 13, 2021Updated 4 years ago
- R package for the joint analysis of multiple single-cell RNA-seq datasets☆219Feb 26, 2024Updated 2 years ago
- Probabilistic gene expression barcodes for cell type annotation☆26Apr 26, 2022Updated 3 years ago
- R package for integrating and comparing multiple single cell genomic datasets☆11Dec 27, 2020Updated 5 years ago
- R interface to megadepth: BigWig and BAM related utilities☆13Dec 12, 2024Updated last year
- Data visualization with R☆12Dec 12, 2020Updated 5 years ago
- HOT regions paper☆11Jun 18, 2019Updated 6 years ago
- A p-value-free method for controlling false discovery rates in high-throughput biological data with two conditions☆41Jul 5, 2022Updated 3 years ago
- Information-based dimensionality reduction☆29Dec 14, 2024Updated last year
- Cell type pipes for R☆52Jan 27, 2024Updated 2 years ago
- Single Cell Analysis Automated Workflow☆28May 22, 2023Updated 2 years ago
- Filtering of Poison noise on a single-cell RNA-seq UMI count matrix☆80Dec 4, 2025Updated 3 months ago
- Conveniently perform ASCAT copy-number analysis from Tumor-Normal or Tumor only BAM files in R☆12Dec 6, 2021Updated 4 years ago
- ☆13Nov 9, 2022Updated 3 years ago
- See https://github.com/LTLA/SingleRBook for the latest version of this content.☆12Jun 21, 2022Updated 3 years ago
- ☆12Dec 7, 2020Updated 5 years ago