Alternatives and similar repositories for tumopp

Users that are interested in tumopp are comparing it to the libraries listed below

• Shians / CellBench
  R package for benchmarking single cell analysis methods
  ☆32Updated 2 years ago
• drisso / zinbwave
  Clone of the Bioconductor repository for the zinbwave package, see https://bioconductor.org/packages/zinbwave
  ☆45Updated last year
• KlugerLab / t-SNE-Heatmaps
  Beta version of 1D t-SNE heatmaps to visualize expression patterns of hundreds of genes simultaneously in scRNA-seq
  ☆48Updated 6 years ago
• LTLA / basilisk
  Clone of the Bioconductor repository for the basilisk package.
  ☆29Updated 2 months ago
• epurdom / clusterExperiment
  R package of techniques for comparing clusterings of single-cell sequencing data
  ☆40Updated last year
• xzhoulab / DRComparison
  Comparison of dimensionality reduction methods
  ☆30Updated 5 years ago
• thelovelab / tximeta
  Transcript quantification import with automatic metadata detection
  ☆67Updated this week
• mkanai / grimon
  R package for plotting 3D graphical visualization of multi-omics data.
  ☆24Updated 3 years ago
• nullranges / nullranges
  Modular package for generation of sets of ranges representing the null hypothesis. These can take the form of bootstrapped ranges (bootRa…
  ☆27Updated 2 months ago
• laurenhsu1 / corral
  Dimensionality reduction and batch integration methods for single cell data
  ☆16Updated 2 years ago
• genesofeve / projectR
  ☆63Updated 10 months ago
• waldronlab / cBioPortalData
  Integrate the cancer genomics portal, cBioPortal, using MultiAssayExperiment
  ☆33Updated 2 months ago
• csoneson / iCOBRA
  Interactive benchmarking of ranking and assignment methods
  ☆16Updated last month
• yuifu / millefy
  Millefy: Genome browser-like visualization of single-cell RNA-seq dataset
  ☆29Updated 6 years ago
• montilab / hypeR
  An R Package for Geneset Enrichment Workflows
  ☆78Updated last month
• Bioconductor / ExperimentHub
  Client to access ExperimentHub resources
  ☆11Updated 3 months ago
• leekgroup / networks_correction
  Code to reproduce analysis in "Addressing confounding artifacts in reconstruction of gene co-expression networks"
  ☆16Updated 6 years ago
• waldronlab / curatedTCGAData
  Curated Data From The Cancer Genome Atlas (TCGA) as MultiAssayExperiment Objects
  ☆44Updated 2 months ago
• nghiavtr / BPSC
  Beta-Poisson model for single-cell RNA-seq data analyses
  ☆16Updated 6 years ago
• COMBINE-lab / EDS
  A simple, intuitive and Efficient single cell binary Data Storage format
  ☆15Updated 6 years ago
• Shians / Glimma
  Glimma R package
  ☆50Updated last year
• SchulzLab / EpigenomicsTutorial-ISMB2017
  Repository for the Epigenomics Tutorial hold at ISMB 2017 in Prague
  ☆14Updated 5 years ago
• willtownes / glmpca
  ☆96Updated last year
• pachterlab / MBGBLHGP_2019
  Code for reproducing results from the paper "Modular and efficient pre-processing of single-cell RNA-seq data"
  ☆23Updated 4 years ago
• CostelloLab / GSEA-InContext
  Gene Set Enrichment Analysis in Python
  ☆11Updated 7 years ago
• gjhunt / dtangle
  Cell type deconvolution from high-throughput gene expression profiling experiments.
  ☆31Updated 4 years ago
• compbiomed / celda
  Bayesian Hierarchical Modeling for Clustering Single Cell Genomic Data
  ☆48Updated 6 years ago
• zhanxw / seqminer
  Query sequence data (VCF/BCF1/BCF2, Tabix, BGEN, PLINK) in R
  ☆32Updated 4 months ago
• kkdey / CountClust
  A R package for Grade of Membership model and Visualization of counts data:
  ☆32Updated 5 years ago
• Nealelab / UKBB_ldsc
  Sample code for ldsc analyses in UKBB
  ☆32Updated 2 years ago