π¦ Tumor growth simulation in C++/R
β20Jun 5, 2026Updated last week
Alternatives and similar repositories for tumopp
Users that are interested in tumopp are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Reproducing the experiments in the paperβ11Dec 14, 2021Updated 4 years ago
- β10Sep 27, 2022Updated 3 years ago
- Code & utilities for the manuscript "Lineage Recording Reveals the Phylodynamics, Plasticity and Paths of Tumor Evolution"β14May 27, 2023Updated 3 years ago
- CellPhy: accurate and fast probabilistic inference of single-cell phylogeniesβ20Jan 8, 2026Updated 5 months ago
- Framework for Metastatic And Clonal History INtegrative Analysisβ37Mar 5, 2021Updated 5 years ago
- Deploy on Railway without the complexity - Free Credits Offer β’ AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- A nicer deparseβ12Jun 22, 2017Updated 8 years ago
- Tumour stratification by maximum-likelihood repeated evolution from multi-region sequencing dataβ67Dec 25, 2022Updated 3 years ago
- A tool kit for dissecting cancer evolution from multi-region derived tumor biopsies via somatic mutationsβ36Jan 28, 2022Updated 4 years ago
- Clonal and subclonal Copy Number Alteration quality check integrating somatic mutationβ26Jan 28, 2026Updated 4 months ago
- π«robabilistic modeling of RNA velocity ⬱β49Updated this week
- Code accompanying "The evolutionary history of 2,658 cancers", Nature 578, 122β128 (2020)β17Jan 15, 2020Updated 6 years ago
- Spatial RNA velocityβ10Oct 3, 2024Updated last year
- Tools for debugging memory leaks in Rβ13Dec 11, 2023Updated 2 years ago
- ConsensusTME Gene Sets and R Scriptβ40Jun 6, 2024Updated 2 years ago
- Deploy on Railway without the complexity - Free Credits Offer β’ AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Dirichlet Process based methods for subclonal reconstruction of tumoursβ32Feb 18, 2026Updated 3 months ago
- A deme-based, spatially explicit model of intra-tumour population geneticsβ21Jan 28, 2025Updated last year
- β10Jan 21, 2023Updated 3 years ago
- A Python package using Gromov-Wasserstein distance to compare cell shapesβ25Updated this week
- β20Oct 2, 2018Updated 7 years ago
- β11Jul 14, 2018Updated 7 years ago
- Pan-cancer quantification of neoantigen-mediated immunoediting in cancer evolutionβ14May 4, 2022Updated 4 years ago
- Bayesian non-parametric clustering (BnpC) of binary data with missing values and uneven error ratesβ22Jul 11, 2024Updated last year
- An Rcpp interface to active bindingsβ17May 25, 2026Updated 3 weeks ago
- GPU virtual machines on DigitalOcean Gradient AI β’ AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Simulation-based inference in JAXβ52Mar 25, 2026Updated 2 months ago
- β10Oct 15, 2025Updated 8 months ago
- Multiscale simulation of multi-cellular systemβ11Updated this week
- Decrypting somatic mutation patterns to reveal the evolution of cancerβ57Mar 10, 2021Updated 5 years ago
- [source] CELLO - Cancer EvoLution toolbox for LOngitudinal dataβ17Aug 24, 2020Updated 5 years ago
- β12Mar 5, 2024Updated 2 years ago
- Inference of putative transmission phylogenetic clustersβ12Oct 13, 2020Updated 5 years ago
- β12Apr 13, 2020Updated 6 years ago
- Landscape Single Cell Entropyβ23Aug 24, 2020Updated 5 years ago
- Managed Kubernetes at scale on DigitalOcean β’ AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Dissecting the effects of DNA copy number variations on transcriptional programs at single-cell resolutionβ14Feb 13, 2026Updated 4 months ago
- ggplot2γ«ι’ι£γγη΄ ζ΅γͺγγγ±γΌγΈγͺγΉγβ13Oct 23, 2015Updated 10 years ago
- R package to do enrichment analysis for neoantigensβ13Feb 21, 2022Updated 4 years ago
- A Weighted Exact Test for Mutually Exclusive Mutations in Cancerβ21Sep 30, 2018Updated 7 years ago
- β25Mar 3, 2020Updated 6 years ago
- [EXPERIMENTAL] R package: future.mapreduce - Utility Functions for Future Map-Reduce API Packagesβ12Apr 7, 2026Updated 2 months ago
- Code accompanying The Evolutionary history of 2,658 cancersβ48Apr 16, 2021Updated 5 years ago