Alternatives and similar repositories for SC_GESTALT

Users that are interested in SC_GESTALT are comparing it to the libraries listed below

• klarman-cell-observatory / scPlot
  Single cell interactive plotting tools
  ☆23Updated 5 years ago
• ChristophH / in-lineage
  Data and code for the paper "Developmental diversification of cortical inhibitory interneurons"
  ☆24Updated 6 years ago
• lamanno-epfl / tomographer
  The Tomographer package implements the mathematical spatial image reconstruction of any set of read counts as described in the following …
  ☆11Updated 4 years ago
• natsuhiko / PHM
  Pairwise Hierarchical Model
  ☆20Updated 3 years ago
• pachterlab / MBGBLHGP_2019
  Code for reproducing results from the paper "Modular and efficient pre-processing of single-cell RNA-seq data"
  ☆23Updated 4 years ago
• linnarsson-lab / cytograph
  Algorithms for single-cell analysis
  ☆29Updated 4 years ago
• klarman-cell-observatory / perturbseq
  Perturb-seq analysis package
  ☆15Updated last year
• veltenlab / mitoClone
  ☆12Updated 4 years ago
• Vivianstats / scINSIGHT
  Matrix factorization model for interpreting single cell gene expression in biologically heterogeneous data
  ☆22Updated last year
• broadinstitute / mix_seq_ms
  Code associated with MIX-seq manuscript
  ☆15Updated 5 years ago
• csoneson / rna_velocity_quant
  Evaluation of the effect of quantification choices on RNA velocity estimates
  ☆27Updated 3 years ago
• powellgenomicslab / ascend
  Analysis of Single Cell Expression, Normalization and Differential expression
  ☆12Updated 5 years ago
• jessemzhang / tn_test
  post-clustering differential expression test
  ☆36Updated 6 years ago
• nghiavtr / ISOP
  Isoform-level expression patterns in single-cell RNA-sequencing data
  ☆11Updated 2 years ago
• jacobhepkema / scover
  scover
  ☆24Updated last year
• satijalab / scChromHMM
  🧬 🦀 A fast and efficient tool to perform a genome wide Single cell Chromatin State Analysis using multimodal histone modification data.…
  ☆29Updated 4 years ago
• davemcg / scEiaD
  Snakefile-based process to turn 1.4 million ocular cells into a unified meta-atlas
  ☆26Updated last year
• khodosevichlab / CellAnnotatoR
  Automated marker-based annotation of cell types
  ☆13Updated 3 years ago
• churchill-lab / scBASE
  A set of tools for accurate quantitation of single-cell allele-specific expression
  ☆13Updated 2 years ago
• MonashBioinformaticsPlatform / celaref
  ☆14Updated 6 years ago
• pachterlab / kite
  kallisto index tag extractor
  ☆20Updated 6 years ago
• aaronmck / Cas9FateMapping
  Collection of code for the GESTALT fate mapping paper using the CRISPR/Cas9 system
  ☆24Updated 7 years ago
• single-cell-genetics / singlecell_neuroseq_paper
  Population-scale single-cell RNA-seq profiling across dopaminergic neuron differentiation
  ☆21Updated last year
• liulab-dfci / lisa
  epigenome analysis to rank transcription factors
  ☆13Updated 5 years ago
• Katsevich-Lab / sceptre
  An R package for single-cell CRISPR screen data analysis emphasizing statistical rigor, massive scalability, and ease of use.
  ☆34Updated last month
• califano-lab / OncoSig
  Code to run OncoSig Analyses
  ☆18Updated 5 years ago
• jessica1338 / CSHMM-for-time-series-scRNA-Seq
  This is the code release for paper Continuous State HMMs for Modeling Time Series Single Cell RNA-Seq Data
  ☆22Updated 7 years ago
• anna-neufeld / countsplit
  ☆21Updated 2 years ago
• wwylab / DeMixT
  ☆37Updated 3 weeks ago
• Core-Bioinformatics / ClustAssess
  Tools for assessing clustering robustness
  ☆25Updated last month