aaronmck / SC_GESTALTLinks
GESTALT processing pipeline for barcodes captured with single-cell RNA sequencing
☆13Updated 5 years ago
Alternatives and similar repositories for SC_GESTALT
Users that are interested in SC_GESTALT are comparing it to the libraries listed below
Sorting:
- Code for reproducing results from the paper "Modular and efficient pre-processing of single-cell RNA-seq data"☆23Updated 4 years ago
- Code associated with MIX-seq manuscript☆15Updated 4 years ago
- Testing a neutral evolution model on cancer sequencing data☆10Updated 4 years ago
- Genomic trajectories (pseudotimes) in the presence of heterogenous environmental and genetic backgrounds☆10Updated 6 years ago
- A set of tools for accurate quantitation of single-cell allele-specific expression☆12Updated 2 years ago
- Algorithms for single-cell analysis☆29Updated 3 years ago
- ☆17Updated 3 years ago
- Pairwise Hierarchical Model☆19Updated 3 years ago
- kallisto index tag extractor☆20Updated 6 years ago
- post-clustering differential expression test☆35Updated 6 years ago
- Evaluation of the effect of quantification choices on RNA velocity estimates☆27Updated 3 years ago
- Analysis of Single Cell Expression, Normalization and Differential expression☆12Updated 5 years ago
- Matrix factorization model for interpreting single cell gene expression in biologically heterogeneous data☆21Updated last year
- Single cell interactive plotting tools☆23Updated 5 years ago
- An R package for single-cell CRISPR screen data analysis emphasizing statistical rigor, massive scalability, and ease of use.☆33Updated last week
- ☆14Updated 6 years ago
- Pipeline to call neoantigens from intron retention events derived from RNA-Seq data.☆28Updated 4 years ago
- 🧬 🦀 A fast and efficient tool to perform a genome wide Single cell Chromatin State Analysis using multimodal histone modification data.…☆28Updated 3 years ago
- Data and code for the paper "Developmental diversification of cortical inhibitory interneurons"☆24Updated 6 years ago
- epigenome analysis to rank transcription factors☆13Updated 5 years ago
- ☆12Updated 4 years ago
- ☆17Updated last year
- Probabilistic gene expression barcodes for cell type annotation☆25Updated 3 years ago
- scover☆23Updated last year
- Comparison of dimensionality reduction methods☆30Updated 5 years ago
- Code to calculate the Splicing Z Score (SpliZ) for single cell RNA-seq splicing analysis☆34Updated 3 years ago
- Isoform-level expression patterns in single-cell RNA-sequencing data☆11Updated 2 years ago
- The Tomographer package implements the mathematical spatial image reconstruction of any set of read counts as described in the following …☆11Updated 4 years ago
- This is the code release for paper Continuous State HMMs for Modeling Time Series Single Cell RNA-Seq Data☆22Updated 7 years ago
- Population-scale single-cell RNA-seq profiling across dopaminergic neuron differentiation☆21Updated last year