Alternatives and similar repositories for SC_GESTALT

Users that are interested in SC_GESTALT are comparing it to the libraries listed below

• powellgenomicslab / ascend
  Analysis of Single Cell Expression, Normalization and Differential expression
  ☆12Updated 5 years ago
• linnarsson-lab / cytograph
  Algorithms for single-cell analysis
  ☆29Updated 3 years ago
• veltenlab / mitoClone
  ☆12Updated 4 years ago
• Vivianstats / scINSIGHT
  Matrix factorization model for interpreting single cell gene expression in biologically heterogeneous data
  ☆21Updated last year
• nghiavtr / ISOP
  Isoform-level expression patterns in single-cell RNA-sequencing data
  ☆11Updated 2 years ago
• HelenaLC / muscat-comparison
  ☆12Updated last year
• marcjwilliams1 / neutralitytestr
  Testing a neutral evolution model on cancer sequencing data
  ☆10Updated 4 years ago
• pachterlab / MBGBLHGP_2019
  Code for reproducing results from the paper "Modular and efficient pre-processing of single-cell RNA-seq data"
  ☆23Updated 4 years ago
• jessica1338 / CSHMM-for-time-series-scRNA-Seq
  This is the code release for paper Continuous State HMMs for Modeling Time Series Single Cell RNA-Seq Data
  ☆22Updated 7 years ago
• jingshuw / descend
  ☆16Updated 3 years ago
• jgamache014 / snRNA-seq-workflow
  Human brain, >200,000 nuclei
  ☆24Updated 3 years ago
• liulab-dfci / lisa
  epigenome analysis to rank transcription factors
  ☆13Updated 5 years ago
• broadinstitute / mix_seq_ms
  Code associated with MIX-seq manuscript
  ☆15Updated 4 years ago
• yasinkaymaz / singleCellRNAseq_workshop
  Introduction to single cell RNAseq data analysis and interpretation course work provided by Harvard Informatics Team.
  ☆16Updated 6 years ago
• skinnider / SCT-MoA
  Source code and data supporting "Evaluating measures of association for single-cell transcriptomics"
  ☆14Updated 6 years ago
• gillislab / MetaMarkers
  Efficiently compute robust markers across single-cell datasets
  ☆11Updated 4 years ago
• khodosevichlab / CellAnnotatoR
  Automated marker-based annotation of cell types
  ☆13Updated 2 years ago
• hochwagenlab / hwglabr2
  Collection of R functions used in the Hochwagen Lab
  ☆12Updated 2 years ago
• cole-trapnell-lab / pseudospace
  ☆12Updated 5 years ago
• Simon-Coetzee / motifBreakR
  A Package For Predicting The Disruptiveness Of Single Nucleotide Polymorphisms On Transcription Factor Binding Sites.
  ☆29Updated 10 months ago
• jw156605 / SingleSplice
  Algorithm for detecting alternative splicing in a population of single cells. See details in Welch et al., Nucleic Acids Research 2016: h…
  ☆21Updated 8 years ago
• MonashBioinformaticsPlatform / celaref
  ☆14Updated 6 years ago
• single-cell-genetics / singlecell_neuroseq_paper
  Population-scale single-cell RNA-seq profiling across dopaminergic neuron differentiation
  ☆21Updated 11 months ago
• pachterlab / BYVSTZP_2020
  This repository contains the code for reproducing all the results and figures from the preprint "Isoform specificity in the mouse primary…
  ☆15Updated 3 years ago
• hanasusak / cDriver
  cDriver R package for finding candidate driver genes in cancers
  ☆18Updated 7 years ago
• ernstlab / ChromTime
  Modeling Spatio-temporal Dynamics of Chromatin Marks
  ☆12Updated 3 years ago
• aaronmck / Cas9FateMapping
  Collection of code for the GESTALT fate mapping paper using the CRISPR/Cas9 system
  ☆23Updated 7 years ago
• yanailab / enhance
  ENHANCE: Accurate denoising of single-cell RNA-Seq data (Python implementation)
  ☆14Updated 6 years ago
• davemcg / scEiaD
  Snakefile-based process to turn 1.4 million ocular cells into a unified meta-atlas
  ☆25Updated last year
• argschwind / TAPseq_manuscript
  Analysis code for the TAP-seq manuscript.
  ☆11Updated 3 years ago