Alternatives and similar repositories for scAnnotatR

Users that are interested in scAnnotatR are comparing it to the libraries listed below

• kharchenkolab / cacoa
  Single-cell Case Control Analysis
  ☆50Updated 8 months ago
• aet21 / EpiSCORE
  Epigenetic cell-type deconvolution from Single-Cell Omic Reference profiles
  ☆33Updated 3 months ago
• satijalab / Mixscale
  ☆19Updated 3 months ago
• cansysbio / ConsensusTME
  ConsensusTME Gene Sets and R Script
  ☆39Updated last year
• theislab / scPoli_reproduce
  Reproducibility notebooks for scPoli
  ☆18Updated 2 years ago
• single-cell-genetics / XClone
  Detection of allele-specific subclonal copy number alterations from single-cell transcriptomic data.
  ☆36Updated 3 weeks ago
• lusystemsbio / NetAct
  Network construction Algorithm
  ☆22Updated 10 months ago
• miccec / yaGST
  ☆13Updated 7 years ago
• powellgenomicslab / DropletQC
  Nuclear fraction QC metric to detect empty droplets and damaged cells in scRNA-seq data
  ☆39Updated 3 years ago
• RMolania / TCGA_PanCancer_UnwantedVariation
  ☆47Updated last year
• BradBalderson / Cytocipher
  Analysis methods for analysing single cell RNA-seq data; particularly with the goal of checking if tentative clusters of cells are signif…
  ☆38Updated last year
• mainciburu / WAT3R
  Workflow for the Association of T-cell receptors from 3' single-cell RNA-seq (WAT3R)
  ☆21Updated 2 years ago
• forrest-lab / NATMI
  NATMI: Network Analysis Toolkit for the Multicellular Interactions
  ☆35Updated 4 years ago
• jingxinfu / TIDEpy
  TIDE (Tumor Immune Dysfunction and Exclusion), a gene expression biomarker to predict the clinical response to immune checkpoint blockade…
  ☆35Updated 2 years ago
• GregorySchwartz / tooManyCellsR
  An R wrapper for too-many-cells, for clustering single cells and analyzing cell clade relationships with colorful visualizations.
  ☆26Updated 5 years ago
• aertslab / SCopeLoomR
  R package (compatible with SCope) to create generic .loom files and extend them with other data e.g.: SCENIC regulons, Seurat clusters an…
  ☆42Updated 3 years ago
• TransBioInfoLab / TNBC_analysis
  Code to reproduce TNBC analysis and figures
  ☆24Updated 3 years ago
• TianLab-Bioinfo / scMAGIC
  A robust and accurate cell type classifier for single cell RNA-seq data
  ☆16Updated 2 years ago
• tgen / banovichlab
  Public code repository for the Banovich Lab at the Translational Genomics Research Institute (TGen).
  ☆46Updated last year
• BoevaLab / ANS_signature_scoring
  ANS_signature_scoring: A gene expression signature scoring Python package.
  ☆16Updated 3 months ago
• chanwkimlab / MarcoPolo
  MarcoPolo is a clustering-free approach to the exploration of bimodally expressed genes along with group information in single-cell RNA-s…
  ☆20Updated 8 months ago
• Vivianstats / scLink
  Inferring gene co-expression networks from single cell gene expression data
  ☆26Updated 2 years ago
• PoolLab / generecovery
  ☆29Updated 2 years ago
• bjstewart1 / kidney_sc_immune
  Repository for scRNAseq study of human kidneys
  ☆15Updated 6 years ago
• klarman-cell-observatory / HTAPP-Pipelines
  A record of the analysis pipelines used to create the HTAPP data
  ☆33Updated 3 months ago
• phipsonlab / speckle
  R package for analysing single cell data
  ☆56Updated 2 years ago
• ati-lz / HCA_Benchmarking
  This repository contains HCA Benchmarking codes
  ☆26Updated 5 years ago
• ZJUFanLab / CellTalkDB
  A manually curated database of literature-supported ligand-receptor interactions in human and mouse
  ☆31Updated last year
• satijalab / azimuth-references
  ☆23Updated 2 months ago
• wenweixiong / MARVEL
  ☆49Updated 11 months ago