raphael-group / wextLinks
A Weighted Exact Test for Mutually Exclusive Mutations in Cancer
☆21Updated 7 years ago
Alternatives and similar repositories for wext
Users that are interested in wext are comparing it to the libraries listed below
Sorting:
- CoMEt: A Statistical Approach to Identify Combinations of Mutually Exclusive Alterations in Cancer☆20Updated 7 years ago
- predicts neoepitopes from phased somatic mutations detected using tumor/normal DNA-seq data☆27Updated 2 years ago
- ImReP is a computational method for rapid and accurate profiling of the adaptive immune repertoire from regular RNA-Seq data.☆29Updated 6 years ago
- Tied Diffusion for Subnetwork Discovery (TieDIE)☆37Updated 4 years ago
- A framework to infer mutational signatures in cancer over time☆56Updated 6 years ago
- Annotation of genomic regions using transcription factor binding sites and epigenetic data☆41Updated 3 years ago
- 3D hotspot mutation proximity analysis tool☆52Updated 2 years ago
- Comprehensive Human Expressed SequenceS☆19Updated 6 months ago
- Code to run OncoSig Analyses☆18Updated 5 years ago
- Pipeline to call neoantigens from intron retention events derived from RNA-Seq data.☆29Updated 4 years ago
- The JunctionSeq R package is a powerful tool for testing and visualizing differential usage of exons and splice junctions in next-generat…☆29Updated 8 years ago
- Detecting somatic mutations and predicting tumor-specific neo-antigens☆29Updated 4 years ago
- MuPeXI: the mutant peptide extractor and informer, a tool for predicting neo-epitopes from tumor sequencing data.☆52Updated 6 years ago
- Code associated with 2019 manuscript entitled "Transcript expression-aware annotation improves rare variant discovery and interpretation…☆34Updated 3 years ago
- JEME method for predicting enhancer targets☆11Updated 8 years ago
- Particle dynamics and simulated annealing for chromosome structure calculation☆28Updated last year
- Universal RObust Peak Annotator☆16Updated 2 years ago
- ☆21Updated 4 years ago
- Code for the paper "A comprehensive examination of Nanopore native RNA sequencing for characterization of complex transcriptomes"☆19Updated 6 years ago
- 🧬 🦀 A fast and efficient tool to perform a genome wide Single cell Chromatin State Analysis using multimodal histone modification data.…☆29Updated 4 years ago
- ☆22Updated 11 months ago
- V'DJer - B Cell Receptor Repertoire Reconstruction from short read mRNA-Seq data☆29Updated 3 years ago
- ☆21Updated 8 years ago
- ☆39Updated 6 months ago
- pathoscore evaluates variant pathogenicity tools and scores.☆22Updated 3 years ago
- PAthway Representation and Analysis by Direct Inference on Graphical Models☆46Updated 7 years ago
- Differential Mutation Analysis☆11Updated 5 years ago
- Differential ATAC-seq toolkit☆28Updated 2 years ago
- ☆15Updated 4 years ago
- Pairtree is a method for reconstructing cancer evolutionary history in individual patients, and analyzing intratumor genetic heterogeneit…☆42Updated last year