A Weighted Exact Test for Mutually Exclusive Mutations in Cancer
☆21Sep 30, 2018Updated 7 years ago
Alternatives and similar repositories for wext
Users that are interested in wext are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Testing a neutral evolution model on cancer sequencing data☆10Feb 17, 2021Updated 5 years ago
- Inferring selection in cancer sequencing data using ABC and population based simulations☆12Jan 31, 2021Updated 5 years ago
- CoMEt: A Statistical Approach to Identify Combinations of Mutually Exclusive Alterations in Cancer☆20Jan 21, 2019Updated 7 years ago
- a pipeline for quantification of circular RNA.☆14May 7, 2017Updated 8 years ago
- ☆15Nov 9, 2018Updated 7 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- HiCtrans is a pipeline to call translocations from Hi-C data☆17Sep 27, 2021Updated 4 years ago
- A python package for learning mutational signatures and their multidimensional genomic properties☆15Sep 1, 2020Updated 5 years ago
- A detailed guide to analise and integrate small-RNASeq and RNASeq samples using miARma-Seq☆11Oct 16, 2019Updated 6 years ago
- R package for haplotype phasing using single-cell RNA-seq data☆14Aug 22, 2017Updated 8 years ago
- identifying mutational significance in cancer genomes☆62Nov 16, 2022Updated 3 years ago
- ☆13Jun 24, 2016Updated 9 years ago
- Create mutation signatures from MAF's, and decompose them into Stratton signatures☆61Jun 7, 2019Updated 6 years ago
- Tumour stratification by maximum-likelihood repeated evolution from multi-region sequencing data☆67Dec 25, 2022Updated 3 years ago
- ARCHIVED☆11May 10, 2022Updated 3 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- predicts neoepitopes from phased somatic mutations detected using tumor/normal DNA-seq data☆28Sep 13, 2023Updated 2 years ago
- highly-efficient & lightweight mutation signature matrix aggregation☆19Jan 12, 2022Updated 4 years ago
- DeTiN is designed to measure tumor-in-normal contamination and improve somatic variant detection sensitivity when using a contaminated ma…☆53May 20, 2022Updated 3 years ago
- SigMa is a probabilistic model for the sequential dependencies of mutation signatures☆17Jul 27, 2019Updated 6 years ago
- GESTALT processing pipeline for barcodes captured with single-cell RNA sequencing☆13Jan 26, 2020Updated 6 years ago
- Pipeline for identifying viral integration and fusion mRNA reads from NGS data. Manuscript is currently in preparation.☆30Jul 13, 2021Updated 4 years ago
- ☆10Sep 20, 2022Updated 3 years ago
- SPRUCE: Somatic Phylogeny Reconstruction using Combinatorial Enumeration☆14Jun 6, 2018Updated 7 years ago
- A framework to infer mutational signatures in cancer over time☆58Jul 9, 2019Updated 6 years ago
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- Bayesian Consensus Clustering, packaged up from code by Eric F. Lock☆19Jun 15, 2023Updated 2 years ago
- hands-on for NGS/SNParray CNV call trainning☆20Jun 13, 2022Updated 3 years ago
- Multi-sample cancer phylogeny reconstruction☆36Oct 19, 2017Updated 8 years ago
- ASCAT R package☆199Feb 12, 2026Updated 2 months ago
- Impute DNA methylation from WGBS data.☆11Apr 23, 2019Updated 7 years ago
- HiCnv is used to call copy number variations and breakpoints from Hi-C data☆23Mar 30, 2024Updated 2 years ago
- Reproducing all analyses and figures for the ASAP-seq paper☆29Jun 11, 2021Updated 4 years ago
- Deconvolving tumor purity and ploidy by integrating copy number alterations and loss of heterozygosity☆40Jul 19, 2017Updated 8 years ago
- ☆18Jul 9, 2018Updated 7 years ago
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- MultiBreak-SV identifies structural variants from next-generation paired end data, third-generation long read data, or data from a combin…☆12Jul 19, 2016Updated 9 years ago
- Comprehensive genome-wide visualization of absolute copy number and copy neutral variations☆29Apr 10, 2019Updated 7 years ago
- A bioinformatics tool for SV detection and virus integration discovery☆21Sep 12, 2017Updated 8 years ago
- DISCOVER co-occurrence and mutual exclusivity analysis for cancer genomics data☆32May 1, 2025Updated 11 months ago
- dN/dS methods to quantify selection in cancer and somatic evolution☆233May 15, 2025Updated 11 months ago
- Rust crate with bindings and interface to the SPOA library for generating consensus sequences.☆13Apr 16, 2019Updated 7 years ago
- Battenberg R package for subclonal copynumber estimation☆95Feb 20, 2026Updated 2 months ago