Integrating LASSO and bootstrapping algorithm to find best prognostic or predictive biomarkers
☆21Oct 12, 2022Updated 3 years ago
Alternatives and similar repositories for Blasso
Users that are interested in Blasso are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- R package to calculate the Aneuploidy Score from Chromosome Arm-level SCNAs/Aneuploidies (CAAs) as outlined and expanded by Shukla et al.…☆16Feb 17, 2021Updated 5 years ago
- A neoantigen calling pipeline begins from variants record file (MAF) (Not maintain now)☆30Aug 30, 2019Updated 6 years ago
- Calculating Tumor microenvironment score☆29Jan 20, 2023Updated 3 years ago
- Code accompanying "The evolutionary history of 2,658 cancers", Nature 578, 122–128 (2020)☆17Jan 15, 2020Updated 6 years ago
- A variable-selection oriented LASSO bagging algorithm for biomarker development in omic-based translational research☆19Jul 8, 2026Updated 3 weeks ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Code accompanying Characterizing genetic intra-tumor heterogeneity across 2,658 human cancer genomes☆45Apr 16, 2021Updated 5 years ago
- bioinformatics R test code☆14May 29, 2026Updated 2 months ago
- Prostate Cancer Alteration Signature Analysis https://xsliulab.github.io/PC_CNA_signature/☆13May 17, 2021Updated 5 years ago
- ☆21Jul 14, 2022Updated 4 years ago
- Functions to analyze copy number aberrations in single-cell data☆13Feb 3, 2025Updated last year
- ☆10Jun 25, 2021Updated 5 years ago
- CancerMIRNome - an interactive analysis and visualization database for miRNome profiles of human cancer☆12Aug 9, 2024Updated last year
- ☆12Dec 5, 2018Updated 7 years ago
- PCaDB - a comprehensive and interactive database for transcriptomes from prostate cancer population cohorts☆10Dec 29, 2021Updated 4 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- NOTE: This package has been renamed to sparrow and will be submitted to Bioconductor 3.14. Please use that package instead. This is kept …☆23Nov 16, 2020Updated 5 years ago
- ☆30Jul 8, 2018Updated 8 years ago
- Scripts and Data associated with our publication on genomic signatures to discriminate LUAD and LUSC lung cancer types using TCGA data☆11Mar 2, 2022Updated 4 years ago
- IOBR is an R package to perform comprehensive analysis of tumor microenvironment and signatures for immuno-oncology. https://iobr.github.…☆293Updated this week
- Quantifying copy number signatures from absolute copy number profiles☆29Jul 23, 2025Updated last year
- ☆38Jul 8, 2020Updated 6 years ago
- Conveniently perform ASCAT copy-number analysis from Tumor-Normal or Tumor only BAM files in R☆12Dec 6, 2021Updated 4 years ago
- ☆14Apr 22, 2021Updated 5 years ago
- From IDAT to beta.☆25Jul 13, 2018Updated 8 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- ☆12May 24, 2022Updated 4 years ago
- An R package to fit dose response curves for data from the Genomics of Drug Sensitivity of Cancer (GDSC) project.☆29Jul 10, 2023Updated 3 years ago
- A set of processes/pipelines for bioinformatics☆15Updated this week
- ☆17Feb 3, 2020Updated 6 years ago
- My Self-Study Room: keep tidy and lightweight☆30Apr 25, 2024Updated 2 years ago
- ☆17Dec 15, 2017Updated 8 years ago
- Multi-Omics integration and VIsualization in Cancer Subtyping☆148Jul 19, 2021Updated 5 years ago
- Publication Page for Satpathy*, Granja* et al 2019☆96Apr 29, 2020Updated 6 years ago
- ☆18Aug 19, 2019Updated 6 years ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- The sampled iterative local approximation algorithm was developed by Dr. Betthauser at the University of Wisconsin-Madison to model longi…☆20Aug 2, 2024Updated last year
- CALDER (Cancer Analysis of Longitudinal Data through Evolutionary Reconstruction) reconstructs evolutionary trees from longitudinal bulk …☆15Nov 28, 2023Updated 2 years ago
- R code for Combining gene mutation with gene expression data improves outcome prediction in myelodysplastic syndromes☆13Mar 23, 2016Updated 10 years ago
- Singularity port of HLA typing based on an input exome BAM file and is currently infers infers alleles for the three major MHC class I (…☆14Jan 15, 2017Updated 9 years ago
- An evolutionary Algorithm for the Identification and Study of Prognostic Gene Expression Signatures in Cancer (Bioconductor)☆15Oct 24, 2020Updated 5 years ago
- ☆10Jan 21, 2023Updated 3 years ago
- CellNet, for cancer☆11Jul 14, 2022Updated 4 years ago