Code accompanying "The evolutionary history of 2,658 cancers", Nature 578, 122–128 (2020)
☆17Jan 15, 2020Updated 6 years ago
Alternatives and similar repositories for PCAWG-11
Users that are interested in PCAWG-11 are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Code accompanying Characterizing genetic intra-tumor heterogeneity across 2,658 human cancer genomes☆44Apr 16, 2021Updated 5 years ago
- Code accompanying The Evolutionary history of 2,658 cancers☆48Apr 16, 2021Updated 5 years ago
- An R package to time somatic mutations☆71Dec 12, 2020Updated 5 years ago
- Dirichlet Process based methods for subclonal reconstruction of tumours☆32Feb 18, 2026Updated 3 months ago
- ☆85Apr 17, 2025Updated last year
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- ☆14Mar 28, 2025Updated last year
- Integrating LASSO and bootstrapping algorithm to find best prognostic or predictive biomarkers☆21Oct 12, 2022Updated 3 years ago
- Spatial Computational Inference of MEtastatic Timing (SCIMET)☆14May 28, 2019Updated 6 years ago
- Immune evasion before tumor invasion in early squamous lung cell carcinogenesis☆17Jul 19, 2021Updated 4 years ago
- R package to calculate the Aneuploidy Score from Chromosome Arm-level SCNAs/Aneuploidies (CAAs) as outlined and expanded by Shukla et al.…☆16Feb 17, 2021Updated 5 years ago
- [source] CELLO - Cancer EvoLution toolbox for LOngitudinal data☆17Aug 24, 2020Updated 5 years ago
- Battenberg R package for subclonal copynumber estimation☆95May 11, 2026Updated 2 weeks ago
- DeCiFer is an algorithm that simultaneously selects mutation multiplicities and clusters SNVs by their corresponding descendant cell frac…☆22May 21, 2024Updated 2 years ago
- ☆12Apr 26, 2020Updated 6 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- A tool kit for dissecting cancer evolution from multi-region derived tumor biopsies via somatic mutations☆36Jan 28, 2022Updated 4 years ago
- Bayesian non-parametric clustering (BnpC) of binary data with missing values and uneven error rates☆22Jul 11, 2024Updated last year
- Comprehensive genome-wide visualization of absolute copy number and copy neutral variations☆29Apr 10, 2019Updated 7 years ago
- Reproducibility code for the manuscript: 'Inferring and perturbing cell fate regulomes in human cerebral organoids☆31Aug 8, 2023Updated 2 years ago
- R package for the identification of cancer-associated mutated genes using gene expression and mutation data.☆10Oct 29, 2021Updated 4 years ago
- Code and additional processed data for manuscript "Tumor and Microenvironment Evolution during Immunotherapy with Nivolumab"; see for man…☆54Feb 12, 2018Updated 8 years ago
- Tumour stratification by maximum-likelihood repeated evolution from multi-region sequencing data☆67Dec 25, 2022Updated 3 years ago
- Prostate Cancer Alteration Signature Analysis https://xsliulab.github.io/PC_CNA_signature/☆13May 17, 2021Updated 5 years ago
- Bayesian mixture models for estimating and clustering cancer cell fractions☆25Dec 20, 2022Updated 3 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- This repository contains the code to run the ASCETS arm-level copy number events caller for targeted sequencing data. ASCETS produces arm…☆18Mar 24, 2026Updated 2 months ago
- A computational method for comparing cellular profiles with the flexibility to place a higher weight on functional features of interest.☆12Jan 31, 2023Updated 3 years ago
- Evolutionary frequency visualization tool of temporal data☆24Jan 25, 2022Updated 4 years ago
- Clonal structure identification through penalizing pairwise differences☆11May 14, 2026Updated last week
- A pan-cancer genome-wide analysis reveals tumour dependencies by induction of nonsense-mediated decay☆15Nov 2, 2020Updated 5 years ago
- Reproducing the experiments in the paper☆11Dec 14, 2021Updated 4 years ago
- R code for Combining gene mutation with gene expression data improves outcome prediction in myelodysplastic syndromes☆13Mar 23, 2016Updated 10 years ago
- ☆10Aug 22, 2018Updated 7 years ago
- ☆18Oct 4, 2023Updated 2 years ago
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- A set of processes/pipelines for bioinformatics☆15May 14, 2026Updated last week
- CellPhy: accurate and fast probabilistic inference of single-cell phylogenies☆20Jan 8, 2026Updated 4 months ago
- R scripts used for MYC analyses☆10Jan 30, 2018Updated 8 years ago
- ☆17Sep 28, 2022Updated 3 years ago
- A tool for timing complex copy number gains in cancer.☆20Dec 4, 2025Updated 5 months ago
- Machine learning use cases for teaching☆13Jul 12, 2017Updated 8 years ago
- Testing a neutral evolution model on cancer sequencing data☆10Feb 17, 2021Updated 5 years ago