CRI-iAtlas / ImmuneSubtypeClassifierLinks
An R package for classification of immune subtypes, in cancer, using gene expression data.
☆46Updated this week
Alternatives and similar repositories for ImmuneSubtypeClassifier
Users that are interested in ImmuneSubtypeClassifier are comparing it to the libraries listed below
Sorting:
- scWGCNA☆61Updated 3 years ago
- This repo contains the code necessary to reproduce the clusters found in "The Immune Landscape of Cancer".☆18Updated 6 years ago
- ☆32Updated 4 years ago
- Public code repository for the Banovich Lab at the Translational Genomics Research Institute (TGen).☆48Updated last year
- ☆48Updated last year
- ☆64Updated 5 years ago
- CONICS: COpy-Number analysis In single-Cell RNA-Sequencing☆76Updated 2 years ago
- Expression Weighted Celltype Enrichment. See the package website for up-to-date instructions on usage.☆60Updated 3 months ago
- Repository for Cibersortx☆62Updated 4 years ago
- Pipeline for characterizing metebolic heterogeneity from single-cell RNA-seq data☆22Updated 4 years ago
- Code repository for single cell RNA-seq☆40Updated 5 years ago
- A tool for removing doublets from single-cell RNA-seq data☆75Updated 5 years ago
- Code accompanying Characterizing genetic intra-tumor heterogeneity across 2,658 human cancer genomes☆44Updated 4 years ago
- ConsensusTME Gene Sets and R Script☆39Updated last year
- Reproducibility repository accompanying Wilk, Rustagi, Zhao, et al. "A single-cell atlas of the peripheral immune response to severe COVI…☆49Updated 4 years ago
- ☆30Updated 7 years ago
- Infer Copy Number Alterations and Clonality in (Single-Cell) RNA-Seq Data☆46Updated 2 years ago
- An R toolkit for estimation of cell composition from bulk expression data☆81Updated 7 months ago
- Multiscale embedded gene co-expression network analysis☆57Updated 2 years ago
- Pileup biallelic SNPs from single-cell and bulk RNA-seq data☆83Updated 3 years ago
- Transcriptomic tools to classify bladder tumours according to six published molecular classifications : Baylor, UNC, MDA, Lund, CIT-Curie…☆27Updated 3 years ago
- Mouse cell atlas☆61Updated 5 years ago
- mutation(barcode) caller for 10x single cell data☆44Updated 5 years ago
- identifying disease critical cell types and programs from single cell RNAseq☆58Updated 3 years ago
- Enrichment Networks for Pathway Enrichment Analysis☆68Updated 2 years ago
- SCDC☆46Updated 7 months ago
- An R package to plot maps of clone distributions in somatic evolution☆19Updated 2 years ago
- scRNA-seq cell type identification☆44Updated 6 years ago
- Discover differential transcript usage from polyA-captured single cell RNA-seq data☆53Updated 2 years ago
- TIDE (Tumor Immune Dysfunction and Exclusion), a gene expression biomarker to predict the clinical response to immune checkpoint blockade…☆32Updated 5 years ago