CRI-iAtlas / ImmuneSubtypeClassifierLinks
An R package for classification of immune subtypes, in cancer, using gene expression data.
☆46Updated 6 months ago
Alternatives and similar repositories for ImmuneSubtypeClassifier
Users that are interested in ImmuneSubtypeClassifier are comparing it to the libraries listed below
Sorting:
- scWGCNA☆61Updated 2 years ago
- This repo contains the code necessary to reproduce the clusters found in "The Immune Landscape of Cancer".☆18Updated 5 years ago
- Public code repository for the Banovich Lab at the Translational Genomics Research Institute (TGen).☆46Updated last year
- An R toolkit for estimation of cell composition from bulk expression data☆74Updated last month
- A R framework for pipeline benchmarking, with application to single-cell RNAseq☆41Updated 3 years ago
- ☆47Updated 6 months ago
- CONICS: COpy-Number analysis In single-Cell RNA-Sequencing☆74Updated 2 years ago
- ConsensusTME Gene Sets and R Script☆39Updated last year
- ☆63Updated 4 years ago
- ☆31Updated 3 years ago
- Gene set enrichment analysis for single-cell RNAseq data☆28Updated 2 years ago
- ☆29Updated 7 years ago
- ☆56Updated last year
- marker-based purification of cell types from single-cell RNA-seq datasets☆115Updated 2 months ago
- Feature Ranking in (possibly large) Clustered Single Cell Data☆40Updated 4 years ago
- Single cell RNA-seq analysis bundle☆35Updated 5 years ago
- A tool for removing doublets from single-cell RNA-seq data☆74Updated 4 years ago
- mutation(barcode) caller for 10x single cell data☆45Updated 5 years ago
- Infer Copy Number Alterations and Clonality in (Single-Cell) RNA-Seq Data☆41Updated last year
- A unified interface to spatial transcriptomics deconvolution tools☆42Updated last week
- Mouse cell atlas☆60Updated 5 years ago
- ☆62Updated 5 years ago
- R Package for Single-Cell Dataset Processing and Visualization☆63Updated 3 years ago
- Pipeline for characterizing metebolic heterogeneity from single-cell RNA-seq data☆22Updated 3 years ago
- scRNA-seq cell type identification☆43Updated 5 years ago
- Code repository for the Tumor Immune Cell Atlas (TICA) project☆63Updated 3 years ago
- scGSVA: Perform GSVA for single cell RNA seq☆63Updated 8 months ago
- Unified access to several second-generation deconvolution methods☆73Updated last week
- Cluster single cells and analyze cell clade relationships with colorful visualizations.☆45Updated 3 years ago
- Hypoxia associated molecular feature analysis☆35Updated 5 years ago