kdkorthauer / cfMeDIPseq-RCCLinks
Analyses for Manuscript "Sensitive detection of renal cell carcinoma using plasma and urine cell-free DNA methylomes"
☆12Updated 4 years ago
Alternatives and similar repositories for cfMeDIPseq-RCC
Users that are interested in cfMeDIPseq-RCC are comparing it to the libraries listed below
Sorting:
- Main repository for Drews et al. (Nature, 2022)☆42Updated last year
- Fork from https://bitbucket.org/mcgranahanlab/lohhla/src, modified for MSKCC needs☆31Updated last year
- Combined mutation recurrence and functional impact to identify coding and non-coding cancer drivers☆15Updated 6 years ago
- ☆23Updated 4 years ago
- All-FIT - Allele-Frequency-based Imputation of Tumor Purity☆17Updated 5 years ago
- DriverPower☆26Updated 5 months ago
- A whole genome bisulfite sequencing (WGBS) pipeline for the alignment and QC of DNA methylation that goes from from raw reads (FastQ) to …☆23Updated 3 years ago
- A statistical tool to detect differential alternative splicing events using single-cell RNA-seq☆22Updated last year
- CNApp represents the first web tool to perform a comprehensive and integrative analysis of copy number alterations (CNAs) in a user-frien…☆20Updated 5 years ago
- ☆13Updated 7 years ago
- ☆11Updated 2 years ago
- CNV analysis workflow code for the manuscript☆13Updated 5 years ago
- ☆17Updated 4 years ago
- Somatic point mutation caller☆29Updated last month
- High-intensity sequencing reveals the sources of plasma circulating cell-free DNA variants☆22Updated 5 years ago
- ☆30Updated last year
- A tool kit for dissecting cancer evolution from multi-region derived tumor biopsies via somatic mutations☆36Updated 3 years ago
- MAnorm2 for Normalizing and Comparing ChIP-seq Samples☆33Updated 2 years ago
- A neoantigen calling pipeline begins from variants record file (MAF) (Not maintain now)☆29Updated 5 years ago
- Micro DNA identification☆23Updated 3 years ago
- ORF Quantification pipeline for Alternative Splicing☆16Updated 4 years ago
- Advanced plotting functions for CNV data generated by CNV-Seq and Control Freec☆13Updated 4 years ago
- DNA copy number detection from off-target sequence data☆32Updated 7 years ago
- Model-based subclonal deconvolution from bulk sequencing.☆33Updated 5 months ago
- code for 'Cell Types of Origin of the Cell Free Transcriptome' by Vorperian et al☆14Updated 3 years ago
- scripts for the integrating ATAC-seq, RNA-seq and CHi-C paper☆24Updated 2 years ago
- Filtering of PDX samples for mouse derived reads☆28Updated 2 years ago
- MutSig2CV from Lawrence et al. 2014☆31Updated 4 years ago
- An R package for predicting HR deficiency from mutation contexts☆28Updated 4 months ago
- A pan-cancer genome-wide analysis reveals tumour dependencies by induction of nonsense-mediated decay☆15Updated 4 years ago