Alternatives and similar repositories for consensusMIBC:

Users that are interested in consensusMIBC are comparing it to the libraries listed below

• cit-bioinfo / BLCAsubtyping
  Transcriptomic tools to classify bladder tumours according to six published molecular classifications : Baylor, UNC, MDA, Lund, CIT-Curie…
  ☆25Updated 2 years ago
• cansysbio / ConsensusTME
  ConsensusTME Gene Sets and R Script
  ☆39Updated 9 months ago
• ebecht / MCPcounter
  ☆58Updated 2 years ago
• arc85 / singleseqgset
  Gene set enrichment analysis for single-cell RNAseq data
  ☆28Updated 2 years ago
• DongqiangZeng0808 / TMEscore
  Calculating Tumor microenvironment score
  ☆28Updated 2 years ago
• Nanostring-Biostats / SpatialDecon
  The SpatialDecon library implements the SpatialDecon algorithm for mixed cell deconvolution in spatial gene expression datasets. (This al…
  ☆37Updated 3 months ago
• omnideconv / spacedeconv
  A unified interface to spatial transcriptomics deconvolution tools
  ☆40Updated 3 weeks ago
• BostonGene / MFP
  Mollecular Functional Portraits
  ☆39Updated 11 months ago
• AndersonHu85 / ccRCC_multiomics
  ☆16Updated last year
• GerkeLab / TCGAhrd
  Homologous recombination deficiency in TCGA PanCancer Atlas
  ☆27Updated 4 years ago
• xmuyulab / ims_gene_signature
  Ratio of the interferon-γ signature to the immunosuppression signature predicts anti-PD-1 therapy response in melanoma
  ☆12Updated last year
• yanailab / PanCancer
  Data available at: https://www.dropbox.com/sh/jh4s57kgbb0rnxe/AABoMK466cGc1OKsOuFN10wca?dl=0 and https://nyulangone-my.sharepoint.com//g/…
  ☆30Updated 2 years ago
• gmstanle / coronary-progenitor-scRNAseq
  ☆13Updated 6 years ago
• foreverdream2 / dysfunction_interaction_test
  ☆28Updated 6 years ago
• ImmucanWP7 / immucan-scdb
  ☆16Updated last year
• sunnyzwu / stromal_subclasses
  code for data processing and visualisation associated with the stromal subclasses manuscript
  ☆11Updated 4 years ago
• yunshun / HumanBreast10X
  ☆25Updated 3 years ago
• jalon9358 / LianLab_CRCLM
  ☆14Updated last year
• tgen / banovichlab
  Public code repository for the Banovich Lab at the Translational Genomics Research Institute (TGen).
  ☆44Updated last year
• jingxinfu / TIDEpy
  TIDE (Tumor Immune Dysfunction and Exclusion), a gene expression biomarker to predict the clinical response to immune checkpoint blockade…
  ☆34Updated 2 years ago
• Precancer / SCC
  Immune evasion before tumor invasion in early squamous lung cell carcinogenesis
  ☆16Updated 3 years ago
• PCAWG-11 / Heterogeneity
  Code accompanying Characterizing genetic intra-tumor heterogeneity across 2,658 human cancer genomes
  ☆43Updated 3 years ago
• JinmiaoChenLab / ezSingleCell2
  ☆54Updated last year
• jumphone / Vector
  Unsupervised Inference of Developmental Directions for Single Cells
  ☆21Updated last year
• ambrosejcarr / seqc
  Single-Cell Sequencing Quality Control and Processing Software
  ☆30Updated 5 years ago
• BodenmillerGroup / imcRtools
  An R package for handling and analysing imaging mass cytometry data
  ☆24Updated 5 months ago
• BaderLab / HumanLiver
  R Data: Single cell RNA sequencing of human liver reveals distinct intrahepatic macrophage populations
  ☆27Updated 4 years ago
• gabrielakinker / CCLE_heterogeneity
  ☆54Updated last year
• shenglinmei / ProstateCancerAnalysis
  ☆17Updated last month
• ajitjohnson / imsig
  Immune Cell Gene Signatures for Profiling the Microenvironment of Solid Tumours
  ☆26Updated 4 years ago