Alternatives and similar repositories for consensusMIBC

Users that are interested in consensusMIBC are comparing it to the libraries listed below

• arc85 / singleseqgset
  Gene set enrichment analysis for single-cell RNAseq data
  ☆28Updated 2 years ago
• Nanostring-Biostats / SpatialDecon
  The SpatialDecon library implements the SpatialDecon algorithm for mixed cell deconvolution in spatial gene expression datasets. (This al…
  ☆40Updated 3 months ago
• cit-bioinfo / BLCAsubtyping
  Transcriptomic tools to classify bladder tumours according to six published molecular classifications : Baylor, UNC, MDA, Lund, CIT-Curie…
  ☆27Updated 2 years ago
• TheHumphreysLab / Mouse_DKD_Rx_Atlas
  ☆16Updated 3 years ago
• ebecht / MCPcounter
  ☆59Updated 3 years ago
• zdq0808 / TMEscore
  Calculating Tumor microenvironment score
  ☆29Updated 2 years ago
• AndersonHu85 / ccRCC_multiomics
  ☆16Updated last year
• faryabib / too-many-cells
  Cluster single cells and analyze cell clade relationships with colorful visualizations.
  ☆45Updated 4 years ago
• BostonGene / MFP
  Mollecular Functional Portraits
  ☆43Updated last year
• meichendong / SCDC
  SCDC
  ☆45Updated 2 months ago
• omnideconv / spacedeconv
  A unified interface to spatial transcriptomics deconvolution tools
  ☆43Updated 3 weeks ago
• sunnyzwu / stromal_subclasses
  code for data processing and visualisation associated with the stromal subclasses manuscript
  ☆11Updated 4 years ago
• guokai8 / scGSVA
  scGSVA: Perform GSVA for single cell RNA seq
  ☆64Updated 9 months ago
• BostonGene / Kassandra
  Bostongene cell deconvolution algorithm from RNAseq
  ☆56Updated last year
• data2intelligence / SpaCET
  Spatial Cellular Estimator for Tumors
  ☆57Updated last week
• tiroshlab / Spatial_Glioma
  Code for major analyses in "Integrative spatial analysis reveals a multi-layered organization of glioblastoma" paper
  ☆51Updated 7 months ago
• JinmiaoChenLab / DISCOtoolkit
  ☆30Updated 3 months ago
• cansysbio / ConsensusTME
  ConsensusTME Gene Sets and R Script
  ☆39Updated last year
• liziyie / scDVA
  An R shiny based tool used for single cell RNA-seq data visualization and analysis.
  ☆33Updated 4 years ago
• bei-lab / scRNA-AHCA
  Single-cell transcriptome profiling of an adult human cell atlas of 15 major organs
  ☆38Updated last year
• ImmucanWP7 / immucan-scdb
  ☆17Updated 2 years ago
• jingxinfu / TIDEpy
  TIDE (Tumor Immune Dysfunction and Exclusion), a gene expression biomarker to predict the clinical response to immune checkpoint blockade…
  ☆35Updated 3 years ago
• BodenmillerGroup / imcRtools
  An R package for handling and analysing imaging mass cytometry data
  ☆27Updated last month
• gabrielakinker / CCLE_heterogeneity
  ☆58Updated last year
• SGI-LungCancer / SingleCell
  Code repository for single cell RNA-seq
  ☆36Updated 4 years ago
• JinmiaoChenLab / ezSingleCell2
  ☆56Updated last year
• kkang7 / CDSeq_R_Package
  CDSeq R Package
  ☆21Updated 2 months ago
• KPMP / Cell-State-Atlas-2022
  Code for a multimodal atlas of healthy and injured cell states and niches in the human kidney
  ☆21Updated last year
• tgen / banovichlab
  Public code repository for the Banovich Lab at the Translational Genomics Research Institute (TGen).
  ☆46Updated last year
• Precancer / SCC
  Immune evasion before tumor invasion in early squamous lung cell carcinogenesis
  ☆16Updated 4 years ago