cit-bioinfo / consensusMIBCLinks
Transcriptomic classifier for Muscle-Invasive Bladder Cancer
☆15Updated 3 years ago
Alternatives and similar repositories for consensusMIBC
Users that are interested in consensusMIBC are comparing it to the libraries listed below
Sorting:
- The SpatialDecon library implements the SpatialDecon algorithm for mixed cell deconvolution in spatial gene expression datasets. (This al…☆41Updated 5 months ago
- Bostongene cell deconvolution algorithm from RNAseq☆57Updated last year
- Transcriptomic tools to classify bladder tumours according to six published molecular classifications : Baylor, UNC, MDA, Lund, CIT-Curie…☆27Updated 2 years ago
- Cluster single cells and analyze cell clade relationships with colorful visualizations.☆45Updated 4 years ago
- ☆59Updated 3 years ago
- TIDE (Tumor Immune Dysfunction and Exclusion), a gene expression biomarker to predict the clinical response to immune checkpoint blockade…☆35Updated 3 years ago
- Mollecular Functional Portraits☆43Updated last year
- ConsensusTME Gene Sets and R Script☆39Updated last year
- ☆53Updated 2 years ago
- An R package for handling and analysing imaging mass cytometry data☆27Updated last week
- A unified interface to spatial transcriptomics deconvolution tools☆42Updated 3 weeks ago
- scGSVA: Perform GSVA for single cell RNA seq☆65Updated 11 months ago
- Gene set enrichment analysis for single-cell RNAseq data☆30Updated 2 years ago
- Gene regulatory network containing signed transcription factor-target gene interactions☆89Updated 5 months ago
- ☆63Updated 5 years ago
- Inference of cell-cell communication from single-cell RNAseq data☆48Updated 6 months ago
- R package for Pathway RespOnsive GENe activity inference☆109Updated 2 years ago
- ☆65Updated 2 years ago
- A portable and fast single cell type identifier☆64Updated 4 years ago
- ☆57Updated last year
- ST Pipeline contains the tools and scripts needed to process and analyze the raw files generated with the Spatial Transcriptomics method …☆84Updated 4 years ago
- Public code repository for the Banovich Lab at the Translational Genomics Research Institute (TGen).☆47Updated last year
- A novel unsupervised batch removal framework, called iMAP, based on neural networks.☆35Updated 3 years ago
- ☆32Updated 3 years ago
- Aligning gene expression trajectories of single-cell reference and query systems☆76Updated 2 months ago
- Repository for codes for the HBCA paper☆38Updated 2 years ago
- ☆17Updated 2 years ago
- Pipeline for characterizing metebolic heterogeneity from single-cell RNA-seq data☆22Updated 3 years ago
- Gene group activity utility functions for Scanpy☆93Updated 10 months ago
- An R package for classification of immune subtypes, in cancer, using gene expression data.☆46Updated 10 months ago