cit-bioinfo / consensusMIBCView external linksLinks
Transcriptomic classifier for Muscle-Invasive Bladder Cancer
☆15Oct 5, 2022Updated 3 years ago
Alternatives and similar repositories for consensusMIBC
Users that are interested in consensusMIBC are comparing it to the libraries listed below
Sorting:
- Transcriptomic tools to classify bladder tumours according to six published molecular classifications : Baylor, UNC, MDA, Lund, CIT-Curie…☆27Dec 21, 2022Updated 3 years ago
- Prostate Cancer Alteration Signature Analysis https://xsliulab.github.io/PC_CNA_signature/☆13May 17, 2021Updated 4 years ago
- R package to do enrichment analysis for neoantigens☆13Feb 21, 2022Updated 3 years ago
- Calculate NEPC risk score from bulk transcriptome data or single-cell RNA-seq for prostate cancer☆16Nov 30, 2024Updated last year
- ConsensusTME Gene Sets and R Script☆39Jun 6, 2024Updated last year
- ☆17Dec 9, 2019Updated 6 years ago
- ☆20Jul 14, 2021Updated 4 years ago
- An R package for classification of immune subtypes, in cancer, using gene expression data.☆47Updated this week
- Convolutional neural network for categorising prostate cancer from MRI images.☆11Jul 22, 2020Updated 5 years ago
- Contribution of systemic and somatic factors to clinical response and resistance in urothelial cancer: an exploratory multi-omic analysis☆24Oct 31, 2017Updated 8 years ago
- A tutorial demonstration of pathml on an example dataset for the manuscript "PathML: A unified framework for WSI analysis with deep learn…☆24Feb 8, 2022Updated 4 years ago
- direct comparison of circular and linear RNA expression☆23Jan 17, 2021Updated 5 years ago
- R package expanding integrative analysis capabilities of Seurat by providing seamless access to popular integration methods and to an int…☆31Sep 3, 2025Updated 5 months ago
- Data available at: https://www.dropbox.com/sh/jh4s57kgbb0rnxe/AABoMK466cGc1OKsOuFN10wca?dl=0 and https://nyulangone-my.sharepoint.com//g/…☆31Aug 17, 2022Updated 3 years ago
- Homologous recombination deficiency in TCGA PanCancer Atlas☆29Dec 31, 2020Updated 5 years ago
- Calculating Tumor microenvironment score☆29Jan 20, 2023Updated 3 years ago
- Multi-Omics integration and VIsualization in Cancer Subtyping☆146Jul 19, 2021Updated 4 years ago
- A bioinformatics API to interface with public multi-omics bio databases for wicked fast data integration.☆36Jul 10, 2024Updated last year
- TIGS (Tumor Immunogenicity Score) project https://doi.org/10.7554/eLife.49020☆33Sep 16, 2021Updated 4 years ago
- Code generated by Evelyn Fitzsimons (Regmefi)☆11Aug 30, 2024Updated last year
- scOntoMatch is an R package which unifies ontology annotation of scRNA-seq datasets to make them comparable across studies☆10Oct 27, 2023Updated 2 years ago
- 宏基因组、代谢组和表型信息关联分析☆11Nov 15, 2018Updated 7 years ago
- ☆37Jul 8, 2020Updated 5 years ago
- ☆90Aug 29, 2025Updated 5 months ago
- m(6)A methylation analysis☆10Mar 9, 2019Updated 6 years ago
- INTEND (IntegratioN of Transcriptomic and EpigeNomic Data), a novel algorithm for integrating gene expression and DNA methylation dataset…☆12Dec 12, 2022Updated 3 years ago
- Segmentation-free Analysis of In Situ Capture data☆13Jan 5, 2026Updated last month
- Explore the Hi-Cs☆11Nov 30, 2025Updated 2 months ago
- QSP model of immune response to COVID19☆10Aug 11, 2020Updated 5 years ago
- RIESLING: Super-enhancer identification. (Rapid Identification of EnhancerS LInked to Nearby Genes)☆10Jun 28, 2018Updated 7 years ago
- CancerMIRNome - an interactive analysis and visualization database for miRNome profiles of human cancer☆12Aug 9, 2024Updated last year
- Repo with analysis code for the vascular atlas paper☆10Nov 22, 2024Updated last year
- FOR my learing☆12Feb 4, 2026Updated last week
- Metagenome sequencing pipeline 宏基因组分析流程☆11Aug 29, 2022Updated 3 years ago
- ☆57Aug 8, 2024Updated last year
- 🌲 An easy-to-use and scalable toolkit for genomic alteration signature (a.k.a. mutational signature) analysis and visualization in R htt…☆158Dec 25, 2025Updated last month
- Code examples for working with web based bioinformatics APIs☆10Feb 17, 2017Updated 8 years ago
- CellNet, for cancer☆10Jul 14, 2022Updated 3 years ago
- repository for the code featured in the blog☆22Jan 31, 2009Updated 17 years ago