Sidra-TBI-FCO / ISPCLinks
Code for the paper on the ICR immune signatures and prognostic significance pan-cancer (TCGA)
☆10Updated 5 years ago
Alternatives and similar repositories for ISPC
Users that are interested in ISPC are comparing it to the libraries listed below
Sorting:
- Validating glioblastoma immune cell immunohistochemsitry using computational deconvolution of TCGA tumors☆14Updated 6 years ago
- ☆17Updated 2 years ago
- TIGS (Tumor Immunogenicity Score) project https://doi.org/10.7554/eLife.49020☆33Updated 4 years ago
- Superseded by https://github.com/MD-Anderson-Bioinformatics/BatchEffectsPackage☆12Updated 5 years ago
- Prostate Cancer Alteration Signature Analysis https://xsliulab.github.io/PC_CNA_signature/☆13Updated 4 years ago
- Detecting cancer subtypes with machine learning.☆10Updated 5 years ago
- Immune Cell Gene Signatures for Profiling the Microenvironment of Solid Tumours☆27Updated 4 years ago
- Collection of functions created and/or curated to aid in the visualization and analysis of single-cell data using R.☆16Updated 4 years ago
- Processed rna-seq data, copy number variation data, and methylation data on GEO and TCGA☆28Updated 2 years ago
- Code for the manuscript "Single-cell analysis of human primary prostate cancer reveals the heterogeneity of tumor-associated epithelial c…☆25Updated 3 years ago
- Dichotomous of innate immune landscape☆17Updated 6 years ago
- Human brain, >200,000 nuclei☆24Updated 4 years ago
- bioinformatics R test code☆14Updated 3 months ago
- ☆14Updated 6 years ago
- Code to reproduce TNBC analysis and figures☆25Updated 3 years ago
- single cell and bulk RNASeq analysis scripts☆14Updated 3 years ago
- R package☆21Updated 2 years ago
- From IDAT to beta.☆25Updated 7 years ago
- GEO RNA-seq Experiments Processing Pipeline☆22Updated 6 years ago
- A neoantigen calling pipeline begins from variants record file (MAF) (Not maintain now)☆29Updated 6 years ago
- ☆17Updated 5 years ago
- This repository contains code for the evaluation of epithelial-to-mesenchymal transition states in cancer.☆13Updated 2 years ago
- ☆29Updated 2 years ago
- BingleSeq - A user-friendly R package for Bulk and Single-cell RNA-Seq data analyses☆22Updated 4 years ago
- GCAP (Gene-level Circular Amplicon Prediction) firstly implements extrachromosomal DNA detection from whole-exome-sequencing (WES) data a…☆20Updated 3 months ago
- Integrating LASSO and bootstrapping algorithm to find best prognostic or predictive biomarkers☆21Updated 3 years ago
- LncmiRSRN: Identifying lncRNA related miRNA sponge regulatory network☆13Updated 3 years ago
- R package to calculate the Aneuploidy Score from Chromosome Arm-level SCNAs/Aneuploidies (CAAs) as outlined and expanded by Shukla et al.…☆16Updated 4 years ago
- Survival Analysis for Protein-Level TCGA Analysis☆11Updated 7 years ago
- ☆25Updated 3 years ago