Sidra-TBI-FCO / ISPCLinks
Code for the paper on the ICR immune signatures and prognostic significance pan-cancer (TCGA)
☆10Updated 5 years ago
Alternatives and similar repositories for ISPC
Users that are interested in ISPC are comparing it to the libraries listed below
Sorting:
- Validating glioblastoma immune cell immunohistochemsitry using computational deconvolution of TCGA tumors☆14Updated 6 years ago
- ☆16Updated 2 years ago
- TIGS (Tumor Immunogenicity Score) project https://doi.org/10.7554/eLife.49020☆32Updated 3 years ago
- Superseded by https://github.com/MD-Anderson-Bioinformatics/BatchEffectsPackage☆12Updated 5 years ago
- Dichotomous of innate immune landscape☆17Updated 6 years ago
- Detecting cancer subtypes with machine learning.☆10Updated 5 years ago
- Immune Cell Gene Signatures for Profiling the Microenvironment of Solid Tumours☆27Updated 4 years ago
- Human brain, >200,000 nuclei☆24Updated 4 years ago
- Prostate Cancer Alteration Signature Analysis https://xsliulab.github.io/PC_CNA_signature/☆12Updated 4 years ago
- Collection of functions created and/or curated to aid in the visualization and analysis of single-cell data using R.☆16Updated 3 years ago
- bioinformatics R test code☆14Updated 2 months ago
- Code for the manuscript "Single-cell analysis of human primary prostate cancer reveals the heterogeneity of tumor-associated epithelial c…☆23Updated 3 years ago
- Integrating LASSO and bootstrapping algorithm to find best prognostic or predictive biomarkers☆20Updated 2 years ago
- ☆17Updated 5 years ago
- R package to calculate the Aneuploidy Score from Chromosome Arm-level SCNAs/Aneuploidies (CAAs) as outlined and expanded by Shukla et al.…☆16Updated 4 years ago
- A neoantigen calling pipeline begins from variants record file (MAF) (Not maintain now)☆29Updated 6 years ago
- Code to reproduce TNBC analysis and figures☆24Updated 3 years ago
- Processed rna-seq data, copy number variation data, and methylation data on GEO and TCGA☆28Updated 2 years ago
- ☆11Updated 5 years ago
- From IDAT to beta.☆25Updated 7 years ago
- This repo contains the code necessary to reproduce the clusters found in "The Immune Landscape of Cancer".☆18Updated 6 years ago
- This repository contains HCA Benchmarking codes☆26Updated 5 years ago
- GEfetch2R - Access Single-cell/Bulk RNA-seq Data from Public Repositories and Benchmark the Subsequent Format Conversion Tools☆36Updated 4 months ago
- Methods and analysis for Garcia-Nieto, et al. Somatic mutations☆16Updated 5 years ago
- ☆28Updated last year
- Harvard FAS informatics scRNAseq workshop website☆38Updated 6 years ago
- ☆30Updated 7 years ago
- XEnograft Visualization & Analysis☆11Updated 2 weeks ago
- Calculating Tumor microenvironment score☆29Updated 2 years ago
- ☆12Updated 5 years ago