greenelab / gbm_immune_validationView external linksLinks
Validating glioblastoma immune cell immunohistochemsitry using computational deconvolution of TCGA tumors
☆14Jul 10, 2019Updated 6 years ago
Alternatives and similar repositories for gbm_immune_validation
Users that are interested in gbm_immune_validation are comparing it to the libraries listed below
Sorting:
- Code for the paper on the ICR immune signatures and prognostic significance pan-cancer (TCGA)☆10Jul 22, 2020Updated 5 years ago
- TIGS (Tumor Immunogenicity Score) project https://doi.org/10.7554/eLife.49020☆33Sep 16, 2021Updated 4 years ago
- ☆11Apr 10, 2016Updated 9 years ago
- Prostate Cancer Alteration Signature Analysis https://xsliulab.github.io/PC_CNA_signature/☆13May 17, 2021Updated 4 years ago
- Immune response signatures in cancer☆12May 22, 2019Updated 6 years ago
- Immune Cell Gene Signatures for Profiling the Microenvironment of Solid Tumours☆28Jan 9, 2021Updated 5 years ago
- This repo contains the code necessary to reproduce the clusters found in "The Immune Landscape of Cancer".☆18Aug 6, 2019Updated 6 years ago
- LncmiRSRN: Identifying lncRNA related miRNA sponge regulatory network☆13Feb 15, 2022Updated 4 years ago
- A pan-cancer genome-wide analysis reveals tumour dependencies by induction of nonsense-mediated decay☆15Nov 2, 2020Updated 5 years ago
- Bayesian network modelling of mutational interactions identifies novel cancer subgroups☆15May 10, 2021Updated 4 years ago
- ☆18Aug 19, 2019Updated 6 years ago
- ☆13Mar 17, 2019Updated 6 years ago
- cnv-seq with custom bugfix☆10Mar 23, 2013Updated 12 years ago
- ☆47Aug 16, 2019Updated 6 years ago
- Collection of fragmentomic analysis scripts☆12Jul 3, 2024Updated last year
- Detecting cancer subtypes with machine learning.☆10Feb 5, 2020Updated 6 years ago
- Software and analysis of metabolism studies across multiple cancer types☆10Sep 5, 2017Updated 8 years ago
- Project for DPA Health Care and Nutrition Analytics☆12Feb 9, 2019Updated 7 years ago
- An R package for classification of immune subtypes, in cancer, using gene expression data.☆47Updated this week
- 📊Evaluating, filtering, comparing, and visualising VCF☆28Mar 9, 2023Updated 2 years ago
- Sparse Partial correlation ON Gene Expression - an R package for fast and robust ceRNA network inference☆14Nov 13, 2025Updated 3 months ago
- Official code repository for JAX-CNV☆14Jan 16, 2020Updated 6 years ago
- ☆11Jun 9, 2019Updated 6 years ago
- Notes in markdown for clinical medicine (mainly in Chinese)☆14Jun 22, 2024Updated last year
- An integrated analysis toolkit and pipeline for Next-Generation Sequencing (NGS) panel sequencing data☆14Aug 16, 2018Updated 7 years ago
- bioinformatics R test code☆14Feb 1, 2026Updated 2 weeks ago
- 单细胞转录组实战☆14Jul 9, 2019Updated 6 years ago
- Pipeline to call somatic cancer neoantigens from mutations in patient tumor DNA☆14Feb 16, 2023Updated 2 years ago
- ☆32Dec 2, 2021Updated 4 years ago
- ☆29Apr 20, 2019Updated 6 years ago
- Advanced plotting functions for CNV data generated by CNV-Seq and Control Freec☆13Aug 25, 2020Updated 5 years ago
- Multifactorial modeling of response to checkpoint inhibitor immunotherapy from tumor, immune, and clinical features☆17Jun 29, 2018Updated 7 years ago
- ☆95Aug 20, 2019Updated 6 years ago
- Web-based database system for flow cell management (incl. REST API)☆16Mar 7, 2024Updated last year
- Wessim: Whole Exome Sequencing SIMulator using in silico exome capture☆15Aug 18, 2020Updated 5 years ago
- Z Hu et al. The repertoire of serous ovarian cancer non-genetic heterogeneity revealed by single-cell sequencing of normal fallopian tube…☆13Nov 22, 2020Updated 5 years ago
- Pipeline to filter whole exome vcf files and generate a report document for clinical diagnostics.☆14Nov 11, 2019Updated 6 years ago
- ☆22Apr 28, 2022Updated 3 years ago
- R script for the covid balf data analysis☆65Aug 12, 2020Updated 5 years ago