SchlossLab / snakemake_cluster_tutorialLinks
Brief tutorial for using Snakemake to create and submit jobs on a HPC cluster.
☆14Updated 3 years ago
Alternatives and similar repositories for snakemake_cluster_tutorial
Users that are interested in snakemake_cluster_tutorial are comparing it to the libraries listed below
Sorting:
- ☆33Updated 5 years ago
- pathway based data integration and visualization☆42Updated 8 months ago
- programs and scripts, mainly python, for analyses related to nucleic or protein sequences☆24Updated last month
- 🧬 MSABrowser: dynamic and fast visualization of sequence alignments, variations, and annotations☆35Updated last year
- ☆19Updated 2 years ago
- A manually curated database of human gut metabolic modules.☆17Updated 7 years ago
- TreeGrafter is a new software tool for annotating uncharacterized protein sequences, using annotated phylogenetic trees.☆13Updated 4 months ago
- An integrated analysis toolkit and pipeline for Next-Generation Sequencing (NGS) panel sequencing data☆14Updated 7 years ago
- A script to make downloading of SRA/GEO data easier☆31Updated 2 years ago
- NASQAR: A web-based platform for High-throughput sequencing data analysis and visualization☆32Updated 5 years ago
- Hybridization probe design for targeted genomic sequencing of diverse and hypervariable viral taxa☆25Updated 2 years ago
- tspex: tissue-specificity calculator☆35Updated 2 years ago
- FunctionaL Omics Processing platform☆13Updated last year
- ☆17Updated 5 months ago
- A Computational Workflow for Designing Libraries of sgRNAs for CRISPR-Mediated Base Editing, and much more☆19Updated last year
- 🍶 Genome assembly with short sequence reads☆25Updated last year
- PhyloCSF++ computes PhyloCSF tracks for whole-genome multiple sequence alignments, scores single MSA, annotates CDS features in GFF/GTF f…☆30Updated 3 years ago
- LncADeep is an ab initio lncRNA identification and functional annotation tool based on deep learning☆28Updated 7 years ago
- Metagenome analysis using the Kraken software suite☆35Updated 3 years ago
- A Nextflow Genome-Wide Association Study (GWAS) Pipeline☆35Updated 5 months ago
- Ultra-fast 5' and 3' demultiplexer☆28Updated last year
- A pipeline for preprocessing NGS data from Illumina, Nanopore and PacBio technologies☆35Updated last year
- Network Visualization using both GUI and Programming☆29Updated 6 months ago
- R package for microbiome analysis. Provides helper functions for common workflows ranging from preprocessing to visualization.☆24Updated last year
- A Nextflow pipeline to align, merge, and organize large PhIP-Seq datasets☆13Updated 10 months ago
- ☆15Updated 2 months ago
- A command line tool to compute mapping statistics from a BAM file☆25Updated 3 years ago
- Hclust2 is a handy tool for plotting heat-maps with several useful options to produce high quality figures that can be used in publicatio…☆12Updated 2 years ago
- viGEN - A bioinformatics pipeline for the exploration of viral RNA in human NGS data☆28Updated last year
- Snakemake workflow for neoantigen prediction☆14Updated 2 years ago