A curated list of bioinformatics bench-marking papers and resources.
☆15Nov 27, 2019Updated 6 years ago
Alternatives and similar repositories for Awesome-Bioinformatics-Benchmarks
Users that are interested in Awesome-Bioinformatics-Benchmarks are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Accompanying analysis code for the FRASER manuscript☆25Aug 27, 2020Updated 6 years ago
- An ATAC-seq pipeline wrapped in NextFlow that can be run by Jupyter☆14Jan 18, 2019Updated 7 years ago
- Companion repository for the human variant calling pipeline comparison paper☆12Feb 21, 2022Updated 4 years ago
- Chromatin ACcessibility and Transcriptomics Unifying Software☆20Oct 25, 2024Updated last year
- ☆11Dec 20, 2024Updated last year
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- python stuff I use☆20Feb 16, 2026Updated 6 months ago
- MultiSKAT is an R-package focused at rare-variant analysis of continuous multiple phenotype data. This project contains the R-codes/funct…☆13Jun 11, 2019Updated 7 years ago
- Sample Contamination Estimate from VCF☆21Nov 6, 2024Updated last year
- Molecular Signatures Database (MSigDB) in a data frame☆16Dec 3, 2018Updated 7 years ago
- MYB transcription factors are one of the largest gene family in plants and control many processes. This repository provides additional ba…☆12Feb 26, 2026Updated 6 months ago
- Variant Annotation, Segregation and Exclusion for family or cohort based rare-disease sequencing studies.☆12Jun 2, 2022Updated 4 years ago
- Snakemake workflow to benchmark scRNA-seq data simulators☆15Aug 10, 2022Updated 4 years ago
- Method for Identifying Novel Transcripts and Isoforms using Equivalence classes, in cancer and rare disease.☆38Jul 1, 2024Updated 2 years ago
- Semantic data model of the set of common data elements for rare disease registration☆12Oct 26, 2023Updated 2 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- A pipeline for scRNA-seq data analysis☆16Mar 26, 2025Updated last year
- ConsensusTME Gene Sets and R Script☆43Jun 6, 2024Updated 2 years ago
- ☆18Feb 24, 2017Updated 9 years ago
- Probabilistic pseudotime for single-cell RNA-seq data☆11Oct 6, 2017Updated 8 years ago
- Data processing and analysis scripts for our spatial profiling of embryos using seqFISH☆18Feb 10, 2023Updated 3 years ago
- FRASER - Find RAre Splicing Events in RNA-seq☆57Feb 11, 2026Updated 6 months ago
- PePPer - Personalized Perturbation Profiler☆11Oct 4, 2018Updated 7 years ago
- practical course about lab methods in genome research☆23Feb 7, 2026Updated 7 months ago
- Homologizer: phasing gene copies into polyploid subgenomes☆13Feb 3, 2026Updated 7 months ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- MegaSSR is a robust online server that identifies Simple Sequence Repeats (SSR) and enables the design of SSR markers in high-throughput …☆11Nov 25, 2024Updated last year
- QTL mapping in outcrossing species using CIM☆10Feb 5, 2026Updated 7 months ago
- genome annotation (RNAseq and TE) pipeline (draft)☆13Apr 20, 2026Updated 4 months ago
- R package implementing affinity propagation clustering along with various utilities☆12Sep 9, 2025Updated 11 months ago
- Fine mapping of genes associated with Parkinson's Disease using a variety of methods☆11Mar 7, 2022Updated 4 years ago
- Workshop in omics integration and systems biology☆89Nov 25, 2024Updated last year
- Cookiecutter profile for making a NextFlow-based bioinformatics tool☆17Jul 8, 2024Updated 2 years ago
- Tool for reliability assessment of omics peprocessing☆12Jan 13, 2026Updated 7 months ago
- Genome-wide Association Study (GWAS) Tutorial☆41Apr 12, 2019Updated 7 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Compute the neighborhood consolidation matrix and identify SHRs☆15Jun 12, 2025Updated last year
- Identify Intra-, Inter-donor variations in bulk or single cell longitudinal dataset☆28Jul 31, 2023Updated 3 years ago
- coding exercise using TCGA immune infiltration data☆11Feb 2, 2024Updated 2 years ago
- Motif Transformers for Predicting Protein-Protein Interactions Between a Novel Virus and Humans☆10Dec 4, 2024Updated last year
- convert a blast output to a bed file☆12Jun 19, 2015Updated 11 years ago
- ☆11Feb 14, 2023Updated 3 years ago
- Report reverse and ambiguous strand SNPs in GWAS data☆34May 15, 2019Updated 7 years ago