kevinblighe / Awesome-Bioinformatics-BenchmarksView external linksLinks
A curated list of bioinformatics bench-marking papers and resources.
☆15Nov 27, 2019Updated 6 years ago
Alternatives and similar repositories for Awesome-Bioinformatics-Benchmarks
Users that are interested in Awesome-Bioinformatics-Benchmarks are comparing it to the libraries listed below
Sorting:
- Accompanying analysis code for the FRASER manuscript☆25Aug 27, 2020Updated 5 years ago
- An ATAC-seq pipeline wrapped in NextFlow that can be run by Jupyter☆14Jan 18, 2019Updated 7 years ago
- python stuff I use☆19Dec 18, 2019Updated 6 years ago
- Snakemake workflow to benchmark scRNA-seq data simulators☆14Aug 10, 2022Updated 3 years ago
- ☆11Dec 20, 2024Updated last year
- Molecular Signatures Database (MSigDB) in a data frame☆16Dec 3, 2018Updated 7 years ago
- Chromatin ACcessibility and Transcriptomics Unifying Software☆17Oct 25, 2024Updated last year
- A pipeline for scRNA-seq data analysis☆15Mar 26, 2025Updated 10 months ago
- ConsensusTME Gene Sets and R Script☆39Jun 6, 2024Updated last year
- Data processing and analysis scripts for our spatial profiling of embryos using seqFISH☆16Feb 10, 2023Updated 3 years ago
- ☆18Feb 24, 2017Updated 8 years ago
- practical course about lab methods in genome research☆23Feb 7, 2026Updated last week
- Sample Contamination Estimate from VCF☆20Nov 6, 2024Updated last year
- Identify Intra-, Inter-donor variations in bulk or single cell longitudinal dataset☆24Jul 31, 2023Updated 2 years ago
- ☆12Oct 29, 2025Updated 3 months ago
- MYB transcription factors are one of the largest gene family in plants and control many processes. This repository provides additional ba…☆12Jul 11, 2025Updated 7 months ago
- course about NGS data processing: genomics and transcriptomics☆33Feb 7, 2026Updated last week
- Method for Identifying Novel Transcripts and Isoforms using Equivalence classes, in cancer and rare disease.☆37Jul 1, 2024Updated last year
- MegaSSR is a robust online server that identifies Simple Sequence Repeats (SSR) and enables the design of SSR markers in high-throughput …☆11Nov 25, 2024Updated last year
- My R scripts, primarily R plotting scripts + some genomics software including 16S rRNA metataxnomics and RNAseq☆12Dec 19, 2022Updated 3 years ago
- Topics In Data Science and Bioinformatics☆79Feb 15, 2024Updated 2 years ago
- Differential analysis for ChIP-seq with biological replicates☆35Jan 5, 2022Updated 4 years ago
- Machine learning in R☆33Nov 15, 2024Updated last year
- Report reverse and ambiguous strand SNPs in GWAS data☆33May 15, 2019Updated 6 years ago
- Workshop in omics integration and systems biology☆85Nov 25, 2024Updated last year
- Probabilistic pseudotime for single-cell RNA-seq data☆10Oct 6, 2017Updated 8 years ago
- An R package for the processing of plate reader and flow cytometry data. This includes: normalisation and calibration of plate reader dat…☆10Aug 12, 2025Updated 6 months ago
- An interactive exploration/visualization platform to help you lift the fog from your CRISPR analyses.☆12Nov 12, 2025Updated 3 months ago
- Filters for false-positive mutation calls in NGS☆34Apr 12, 2019Updated 6 years ago
- coding exercise using TCGA immune infiltration data☆11Feb 2, 2024Updated 2 years ago
- Gene expression viewer template☆11Aug 30, 2017Updated 8 years ago
- Python pipeline and Javascript scatter plot library for single-cell datasets, http://cellbrowser.rtfd.org☆13Updated this week
- ☆10Oct 18, 2021Updated 4 years ago
- genome annotation (RNAseq and TE) pipeline (draft)☆13Aug 26, 2025Updated 5 months ago
- LaTeX template of graduate Thesis [University of Chinese Academy of Sciences]☆12Nov 7, 2017Updated 8 years ago
- Services and guidelines for normalizing drug and other therapy terms☆13Jan 13, 2026Updated last month
- Here you can find the scripts we used in our tutorial "Falling in love with R". You can look for them in our Youtube or Facebook page: Wi…☆12May 13, 2022Updated 3 years ago
- bioInfograph: an online tool to design and display multi-panel scientific figure interactively☆12Feb 15, 2022Updated 4 years ago
- Supporting information of 'Single-cell RNA sequencing of a European and an African lymphoblastoid cell line'☆10Feb 27, 2020Updated 5 years ago