Reproducing the experiments in the paper
☆11Dec 14, 2021Updated 4 years ago
Alternatives and similar repositories for treeVAE-reproducibility
Users that are interested in treeVAE-reproducibility are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆10Sep 27, 2022Updated 3 years ago
- Code & utilities for the manuscript "Lineage Recording Reveals the Phylodynamics, Plasticity and Paths of Tumor Evolution"☆14May 27, 2023Updated 2 years ago
- 🦀 Tumor growth simulation in C++/R☆20Dec 30, 2025Updated 2 months ago
- Lineage Tracing by Integrating Mutation and Transcriptomic data☆13Jun 16, 2020Updated 5 years ago
- A Package for Cas9-Enabled Single Cell Lineage Tracing Tree Reconstruction☆99Feb 5, 2026Updated last month
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- ☆13Jul 28, 2023Updated 2 years ago
- ☆10Oct 15, 2025Updated 5 months ago
- CellPhy: accurate and fast probabilistic inference of single-cell phylogenies☆20Jan 8, 2026Updated 2 months ago
- Code accompanying "The evolutionary history of 2,658 cancers", Nature 578, 122–128 (2020)☆17Jan 15, 2020Updated 6 years ago
- ☆11Feb 11, 2021Updated 5 years ago
- ☆12Aug 8, 2024Updated last year
- Bayesian non-parametric clustering (BnpC) of binary data with missing values and uneven error rates☆22Jul 11, 2024Updated last year
- Population balance analysis☆44Apr 25, 2019Updated 6 years ago
- ☆26Dec 25, 2023Updated 2 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click and start building anything your business needs.
- The Monod package fits CME models to sequencing data.☆33Updated this week
- Toolbox of the Human Neural Organoid Cell Atlas☆30Updated this week
- Dissecting the effects of DNA copy number variations on transcriptional programs at single-cell resolution☆13Feb 13, 2026Updated last month
- [source] CELLO - Cancer EvoLution toolbox for LOngitudinal data☆17Aug 24, 2020Updated 5 years ago
- Inference of putative transmission phylogenetic clusters☆12Oct 13, 2020Updated 5 years ago
- Dirichlet Process based methods for subclonal reconstruction of tumours☆32Feb 18, 2026Updated last month
- PRObabilistic Simulations of ScRNA-seq Tree-like Topologies☆26Jan 10, 2024Updated 2 years ago
- ☆12Apr 13, 2020Updated 5 years ago
- ☆33Mar 16, 2026Updated last week
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- ☆17Mar 24, 2023Updated 3 years ago
- A simulator for single-cell expression data guided by gene regulatory networks☆75May 8, 2024Updated last year
- Repository to reproduce all analyses for Lareau*, Ludwig*, et al. 2020☆21Jul 13, 2023Updated 2 years ago
- ☆13Sep 14, 2021Updated 4 years ago
- Global Waddington-OT☆23Mar 25, 2025Updated last year
- Prediction fitness of leaves on a genealogical tree☆12May 7, 2015Updated 10 years ago
- Heuristic, parsimony-based ancestral recombination graph inference☆17Aug 25, 2021Updated 4 years ago
- ☆12Nov 9, 2020Updated 5 years ago
- The main repository for ACTIVA: realistic single-cell RNA-seq generation with automatic cell-type identification using introspective vari…☆10Jan 23, 2023Updated 3 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Notebooks for CPA figures☆14Dec 9, 2022Updated 3 years ago
- 𝒫robabilistic modeling of RNA velocity ⬱☆49Updated this week
- MaveDB database web application☆13Nov 17, 2023Updated 2 years ago
- LoopPredictor: Predicting unknown enhancer-mediated genome topology by an ensemble machine learning model☆14Jun 18, 2021Updated 4 years ago
- Reproducing the experiments of the DestVI paper☆22Feb 9, 2022Updated 4 years ago
- Solutions to Rosalind Bioinformatics Problems☆14Nov 9, 2014Updated 11 years ago
- Official Python implementation of Delaunay Component Analysis algorithm☆12May 18, 2022Updated 3 years ago