khalilouardini / treeVAE-reproducibility
Reproducing the experiments in the paper
☆10Updated 3 years ago
Alternatives and similar repositories for treeVAE-reproducibility:
Users that are interested in treeVAE-reproducibility are comparing it to the libraries listed below
- ☆20Updated this week
- A method for analyzing scATAC-seq experiments.☆28Updated 3 weeks ago
- Codebase for PRESCIENT (Potential eneRgy undErlying Single Cell gradIENTs) for generative modeling of single-cell time-series.☆46Updated 2 months ago
- Code to reproduce the analysis of "Decoding gene regulation in the mouse embryo using single-cell multi-omics""☆40Updated 2 years ago
- Tools for sgRNA calling in direct capture Perturb-seq data☆32Updated last year
- Python package for analysis of multiomic single cell RNA-seq and ATAC-seq.☆61Updated 11 months ago
- ☆36Updated 6 months ago
- Single cell omics biology annotations☆50Updated 3 weeks ago
- PRObabilistic Simulations of ScRNA-seq Tree-like Topologies☆26Updated last year
- scOpen: single-cell open chromatin analysis via NMF modelling☆26Updated 2 years ago
- This repository contains our CellTag workflow, as deployed in our 2018 Biddy et al., Nature paper.☆31Updated 9 months ago
- Repository to reproduce all analyses for Lareau*, Ludwig*, et al. 2020☆16Updated last year
- Scalable sequence-informed embedding of single-cell ATAC-seq data with CellSpace☆39Updated 2 months ago
- Unagi: Deep Generative Model for Deciphering Cellular Dynamics and In-Silico Drug Discovery in Complex Diseases.☆13Updated 2 months ago
- ☆17Updated 7 months ago
- Quasilinear data representations for single-cell omics data analysis☆42Updated last year
- Inferring cell-cell interactions from pseudotime ordering of scRNA-Seq data☆24Updated 2 years ago
- ACTIONet single-cell analysis framework☆38Updated 6 months ago
- PhyloVelo, Phylogeny-based transcriptomic velocity of single cells☆43Updated last year
- Lineage Tracing by Integrating Mutation and Transcriptomic data☆12Updated 4 years ago
- pseudobulking on an AnnData object☆29Updated 2 weeks ago
- Gene regulatory network inference for RNA velocity and pseudotime data☆25Updated last week
- Benchmark of GRNs using the GRETA pipeline☆23Updated last week
- Spatial reconstruction of dissociated single-cell data☆17Updated last year
- code to run EPInformer for gene expression prediction and gene-enhancer links prioritization☆38Updated 4 months ago
- single-cell Nucleosome Methylation Transcription☆13Updated 7 years ago
- Co-accessibility network from single-cell ATAC-seq data. Python code, based on Cicero package (R).☆20Updated last month
- ☆50Updated 4 months ago
- Causal inference, differential expression, and co-expression for scRNA-seq☆18Updated 3 years ago
- Population balance analysis☆44Updated 5 years ago