khalilouardini / treeVAE-reproducibilityLinks
Reproducing the experiments in the paper
☆10Updated 3 years ago
Alternatives and similar repositories for treeVAE-reproducibility
Users that are interested in treeVAE-reproducibility are comparing it to the libraries listed below
Sorting:
- ☆26Updated 2 months ago
- A method for analyzing scATAC-seq experiments.☆31Updated last week
- Code to reproduce the analysis of "Decoding gene regulation in the mouse embryo using single-cell multi-omics""☆40Updated 2 years ago
- Single cell omics biology annotations☆51Updated 2 months ago
- Tools for sgRNA calling in direct capture Perturb-seq data☆35Updated 2 years ago
- ☆18Updated 10 months ago
- Inferring cell-cell interactions from pseudotime ordering of scRNA-Seq data☆25Updated 2 years ago
- Python package for analysis of multiomic single cell RNA-seq and ATAC-seq.☆63Updated last year
- PhyloVelo, Phylogeny-based transcriptomic velocity of single cells☆43Updated last year
- Whole mouse brain snATAC seq analysis☆26Updated 2 months ago
- Lineage Tracing by Integrating Mutation and Transcriptomic data☆13Updated 5 years ago
- Scalable sequence-informed embedding of single-cell ATAC-seq data with CellSpace☆41Updated 5 months ago
- Benchmark of GRNs using the GRETA pipeline☆24Updated 3 months ago
- Co-accessibility network from single-cell ATAC-seq data. Python code, based on Cicero package (R).☆21Updated this week
- Nextflow pipeline for cross-species integration and assessment of single cell RNA-seq datasets☆39Updated last year
- Decima is a Python library to train sequence models on single-cell RNA-seq data.☆38Updated this week
- ☆13Updated last year
- Code repository for macsGESTALT single cell lineage tracing analysis https://doi.org/10.1101/2020.08.11.245787☆8Updated 4 years ago
- PRObabilistic Simulations of ScRNA-seq Tree-like Topologies☆26Updated last year
- ☆35Updated 9 months ago
- ☆54Updated this week
- A python package for chromVAR☆28Updated 2 years ago
- Pipeline to run scE2G☆26Updated last week
- pseudobulking on an AnnData object☆32Updated 3 months ago
- Unagi: Deep Generative Model for Deciphering Cellular Dynamics and In-Silico Drug Discovery in Complex Diseases.☆17Updated this week
- Port of symphony algorithm of single-cell reference atlas mapping to Python☆28Updated 7 months ago
- Code for Universal Single-Cell Matching with Unpaired Feature Sets☆21Updated 4 years ago
- This repository contains our CellTag workflow, as deployed in our 2018 Biddy et al., Nature paper.☆32Updated last year
- Repository to reproduce all analyses for Lareau*, Ludwig*, et al. 2020☆16Updated last year
- ☆20Updated last week