Reproducing the experiments in the paper
☆11Dec 14, 2021Updated 4 years ago
Alternatives and similar repositories for treeVAE-reproducibility
Users that are interested in treeVAE-reproducibility are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆10Sep 27, 2022Updated 3 years ago
- Code & utilities for the manuscript "Lineage Recording Reveals the Phylodynamics, Plasticity and Paths of Tumor Evolution"☆14May 27, 2023Updated 3 years ago
- 🦀 Tumor growth simulation in C++/R☆20Jun 22, 2026Updated 2 months ago
- A Package for Cas9-Enabled Single Cell Lineage Tracing Tree Reconstruction☆100Jul 23, 2026Updated last month
- Lineage Tracing by Integrating Mutation and Transcriptomic data☆13Jun 16, 2020Updated 6 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- ☆14Jul 28, 2023Updated 3 years ago
- Quantitative Fate Mapping: reconstructs the hierarchy and dynamics of progenitor states from retrospective lineage barcodes. Cell, 2022.☆10Oct 15, 2025Updated 10 months ago
- CellPhy: accurate and fast probabilistic inference of single-cell phylogenies☆23Jan 8, 2026Updated 8 months ago
- Code accompanying "The evolutionary history of 2,658 cancers", Nature 578, 122–128 (2020)☆17Jan 15, 2020Updated 6 years ago
- ☆11Feb 11, 2021Updated 5 years ago
- ☆12Aug 8, 2024Updated 2 years ago
- Bayesian non-parametric clustering (BnpC) of binary data with missing values and uneven error rates☆23Jul 11, 2024Updated 2 years ago
- Population balance analysis☆46Apr 25, 2019Updated 7 years ago
- ☆29Dec 25, 2023Updated 2 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- The Monod package fits CME models to sequencing data.☆36Apr 24, 2026Updated 4 months ago
- PRObabilistic Simulations of ScRNA-seq Tree-like Topologies☆29Jan 10, 2024Updated 2 years ago
- Inference of putative transmission phylogenetic clusters☆12Oct 13, 2020Updated 5 years ago
- Dissecting the effects of DNA copy number variations on transcriptional programs at single-cell resolution☆14Feb 13, 2026Updated 7 months ago
- Dirichlet Process based methods for subclonal reconstruction of tumours☆34Feb 18, 2026Updated 6 months ago
- ☆13Apr 13, 2020Updated 6 years ago
- ☆35Jul 20, 2026Updated last month
- Prediction fitness of leaves on a genealogical tree☆12May 7, 2015Updated 11 years ago
- A simulator for single-cell expression data guided by gene regulatory networks☆83May 8, 2024Updated 2 years ago
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- Repository to reproduce all analyses for Lareau*, Ludwig*, et al. 2020☆23Jul 13, 2023Updated 3 years ago
- ☆15Mar 24, 2023Updated 3 years ago
- Heuristic, parsimony-based ancestral recombination graph inference☆17Aug 25, 2021Updated 5 years ago
- Global Waddington-OT☆23Mar 25, 2025Updated last year
- [source] CELLO - Cancer EvoLution toolbox for LOngitudinal data☆17Aug 24, 2020Updated 6 years ago
- ☆12Nov 9, 2020Updated 5 years ago
- Solutions to Rosalind Bioinformatics Problems☆14Nov 9, 2014Updated 11 years ago
- The main repository for ACTIVA: realistic single-cell RNA-seq generation with automatic cell-type identification using introspective vari…☆10Jan 23, 2023Updated 3 years ago
- Framework for Metastatic And Clonal History INtegrative Analysis☆38Mar 5, 2021Updated 5 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- 𝒫robabilistic modeling of RNA velocity ⬱☆49Jul 2, 2026Updated 2 months ago
- MaveDB database web application☆13Nov 17, 2023Updated 2 years ago
- HAL (Hybrid Automata Library) is the one-stop shop for all of your hybrid modeling needs☆38Aug 19, 2024Updated 2 years ago
- LoopPredictor: Predicting unknown enhancer-mediated genome topology by an ensemble machine learning model☆14Jun 18, 2021Updated 5 years ago
- The GitHub for CLUES2, a method for inferring and evaluating evidence for selection.☆22Apr 9, 2025Updated last year
- ConsensusTME Gene Sets and R Script☆43Jun 6, 2024Updated 2 years ago
- Reproducing the experiments of the DestVI paper☆24Feb 9, 2022Updated 4 years ago