khalilouardini / treeVAE-reproducibility
Reproducing the experiments in the paper
☆10Updated 3 years ago
Alternatives and similar repositories for treeVAE-reproducibility:
Users that are interested in treeVAE-reproducibility are comparing it to the libraries listed below
- Tools for sgRNA calling in direct capture Perturb-seq data☆32Updated last year
- A method for analyzing scATAC-seq experiments.☆30Updated last month
- Python package for analysis of multiomic single cell RNA-seq and ATAC-seq.☆61Updated last year
- ☆20Updated 2 weeks ago
- Decima is a Python library to train sequence models on single-cell RNA-seq data.☆33Updated 2 weeks ago
- ☆25Updated 3 months ago
- Scalable sequence-informed embedding of single-cell ATAC-seq data with CellSpace☆40Updated 3 months ago
- ☆25Updated last week
- Benchmark of GRNs using the GRETA pipeline☆24Updated last month
- scOpen: single-cell open chromatin analysis via NMF modelling☆26Updated 2 years ago
- Single cell omics biology annotations☆51Updated last month
- Codebase for PRESCIENT (Potential eneRgy undErlying Single Cell gradIENTs) for generative modeling of single-cell time-series.☆46Updated 3 months ago
- Task-based gene regulatory network inference using single-cell or bulk gene expression data conditioned on a prior network.☆49Updated 9 months ago
- Molecular interactions inference from single-cell multi-omics data☆24Updated last week
- PhyloVelo, Phylogeny-based transcriptomic velocity of single cells☆43Updated last year
- ☆47Updated last year
- Co-accessibility network from single-cell ATAC-seq data. Python code, based on Cicero package (R).☆21Updated last week
- A python package for chromVAR☆27Updated last year
- This repository contains our CellTag workflow, as deployed in our 2018 Biddy et al., Nature paper.☆32Updated 10 months ago
- PRObabilistic Simulations of ScRNA-seq Tree-like Topologies☆26Updated last year
- PECA is a software for inferring context specific gene regulatory network from paired gene expression and chromatin accessibility data☆43Updated last year
- ☆12Updated last year
- Code to reproduce the analysis of "Decoding gene regulation in the mouse embryo using single-cell multi-omics""☆40Updated 2 years ago
- ☆35Updated last month
- ACTIONet single-cell analysis framework☆38Updated 7 months ago
- Single Cell Transcriptomics of 25 Human Organs to Create a Tabula Sapiens☆41Updated last year
- Repository to reproduce all analyses for Lareau*, Ludwig*, et al. 2020☆16Updated last year
- Spatial reconstruction of dissociated single-cell data☆17Updated last year
- Nextflow pipeline for cross-species integration and assessment of single cell RNA-seq datasets☆37Updated last year
- ☆51Updated 5 months ago