kkang7 / CDSeq_R_PackageView external linksLinks
CDSeq R Package
☆21Jul 1, 2025Updated 7 months ago
Alternatives and similar repositories for CDSeq_R_Package
Users that are interested in CDSeq_R_Package are comparing it to the libraries listed below
Sorting:
- corto (Correlation Tool): an R package to generate correlation-based DPI networks☆20Mar 28, 2023Updated 2 years ago
- ☆10May 25, 2025Updated 8 months ago
- Landscape Single Cell Entropy☆21Aug 24, 2020Updated 5 years ago
- This package implements the Ensemble of Gene Set Enrichment Analyses (EGSEA) method for gene set testing.☆11Jan 21, 2024Updated 2 years ago
- Isoform-level expression patterns in single-cell RNA-sequencing data☆11Apr 20, 2023Updated 2 years ago
- Supplementary information for "Population-level comparisons of gene regulatory networks modeled on high-throughput single-cell transcript…☆11Jan 15, 2024Updated 2 years ago
- ☆33Nov 9, 2022Updated 3 years ago
- BLADE: Bayesian Log-normAl DEconvolution for enhanced in silico microdissection of bulk gene expression data☆29Apr 3, 2024Updated last year
- Efficiently compute robust markers across single-cell datasets☆12Apr 21, 2021Updated 4 years ago
- COSMOS (Causal Oriented Search of Multi-Omic Space) is a method that integrates phosphoproteomics, transcriptomics, and metabolomics data…☆65Updated this week
- Finding the causality in biological pathways☆14Jul 12, 2023Updated 2 years ago
- Trans-association between HLA and TCR-CDR3☆19Mar 29, 2023Updated 2 years ago
- scAB detects multiresolution cell states with clinical significance☆20Nov 14, 2022Updated 3 years ago
- ImmuCellAI (Immune Cell Abundance Identifier) is a tool to estimate the abundance of 24 immune cells from gene expression dataset includi…☆15May 25, 2025Updated 8 months ago
- Exon-Intron Split Analysis (EISA) in R☆17Nov 3, 2025Updated 3 months ago
- ConsensusTME Gene Sets and R Script☆39Jun 6, 2024Updated last year
- NOTE: This package has been renamed to sparrow and will be submitted to Bioconductor 3.14. Please use that package instead. This is kept …☆21Nov 16, 2020Updated 5 years ago
- Unified access to several second-generation deconvolution methods☆91Jan 5, 2026Updated last month
- Single-Cell Inference of Class Switch Recombination☆20Updated this week
- A network-based approach for exon set enrichment☆15Jul 16, 2025Updated 7 months ago
- binned motif enrichment analysis and visualisation☆45Jan 27, 2026Updated 2 weeks ago
- Wrapper and helper functions to use bulk RNA-seq differential expression methods with single-cell data☆21Feb 4, 2024Updated 2 years ago
- SCDC☆46Jun 20, 2025Updated 7 months ago
- Visualize the results of cell-cell communication analysis☆24Jan 21, 2023Updated 3 years ago
- Python package to load and query ARCHS4 data☆26Jul 25, 2025Updated 6 months ago
- BulkSignalR☆26Jul 24, 2025Updated 6 months ago
- ☆25Aug 1, 2022Updated 3 years ago
- Perform differential expression analysis on multi-sample single cell datasets using linear mixed models☆29Feb 2, 2026Updated 2 weeks ago
- NaRnEA (Nonparametric analytical Rank-based Enrichment Analysis)☆11Mar 2, 2023Updated 2 years ago
- Pipeline to analyse ChIP-Rx data, i.e ChIP-Seq with reference exogenous genome spike-in normalization☆15Sep 18, 2025Updated 4 months ago
- Single cell transcriptomics reveals cerebrospinal fluid immune dysregulation during healthy brain aging and cognitive impairment☆28May 31, 2023Updated 2 years ago
- FastIntegrate integrates thousands of scRNA-seq datasets and outputs batch-corrected values for downstream analysis☆23Oct 25, 2024Updated last year
- Cell-Centric View of Tissue Transcriptome Measuring Cellular Compositions of Immune Microenvironment From Mouse RNA-Seq Data.☆26Nov 2, 2021Updated 4 years ago
- Analysis of cell-cell communication at single-cell resolution☆106Sep 10, 2024Updated last year
- ☆34Nov 14, 2025Updated 3 months ago
- Single-cell RNA-seq data-based inference of multilayer inter- and intra-cellular signaling networks☆29Aug 16, 2021Updated 4 years ago
- The integration of single cell rank-based gene set enrichment analysis☆145Jan 14, 2026Updated last month
- A portable and fast single cell type identifier☆63May 12, 2021Updated 4 years ago
- ☆32Dec 2, 2021Updated 4 years ago