rrwick / DeepbinnerLinks
a signal-level demultiplexer for Oxford Nanopore reads
☆126Updated 4 years ago
Alternatives and similar repositories for Deepbinner
Users that are interested in Deepbinner are comparing it to the libraries listed below
Sorting:
- ☆79Updated 5 years ago
- SquiggleKit: A toolkit for manipulating nanopore signal data☆128Updated last year
- Long-read mock community experiments☆104Updated 4 years ago
- RaGOO is no longer supported. Please use RagTag instead: https://github.com/malonge/RagTag☆172Updated 4 years ago
- Pairwise SNP distance matrix from a FASTA sequence alignment☆143Updated last year
- SALSA: A tool to scaffold long read assemblies with Hi-C data☆187Updated last year
- Benchmarking of long-read assembly tools for bacterial whole genomes☆172Updated 4 years ago
- Modular command-line solution for visualisation, quality control and taxonomic partitioning of genome datasets☆208Updated last year
- a Bioinformatics Application for Navigating De novo Assembly Graphs Easily☆150Updated 2 weeks ago
- Research release basecalling models and configurations☆116Updated 5 months ago
- A fast whole-genome aligner based on de Bruijn graphs☆153Updated 4 months ago
- LongQC is a tool for the data quality control of the PacBio and ONT long reads.☆176Updated last year
- A tool to identify, orient, trim and rescue full length cDNA reads☆83Updated 3 years ago
- Analysis components from Oxford Nanopore Research☆96Updated last year
- Assemblytics is a bioinformatics tool to detect and analyze structural variants from a genome assembly by comparing it to a reference gen…☆146Updated 4 months ago
- Constructing a pangenome gene graph☆198Updated 3 months ago
- qcat is a Python command-line tool for demultiplexing Oxford Nanopore reads from FASTQ files.☆81Updated 4 years ago
- ☆123Updated 3 months ago
- ONT assembly and Illumina polishing pipeline☆89Updated 4 years ago
- A *fast* tool for BAM/CRAM quality evaluation, intended for long reads☆164Updated last week
- snipit: summarise snps relative to your reference sequence☆162Updated last month
- ☆219Updated 9 months ago
- Python programs for processing GFF3 files☆101Updated last year
- Structural Variant Identification Method using Long Reads☆178Updated 4 years ago
- Create statistic summary of an Oxford Nanopore read dataset☆123Updated 3 years ago
- Nanopore data assembler☆161Updated 3 years ago
- Program for estimating πN/πS, dN/dS, and other diversity measures from next-generation sequencing data☆117Updated 2 years ago
- Wally: Visualization of aligned sequencing reads and contigs☆120Updated last month
- A post sequencing QC tool for Oxford Nanopore sequencers☆103Updated 3 months ago
- Same species annotation lift over pipeline.☆98Updated 2 years ago