rrwick / Deepbinner
a signal-level demultiplexer for Oxford Nanopore reads
☆123Updated 4 years ago
Alternatives and similar repositories for Deepbinner:
Users that are interested in Deepbinner are comparing it to the libraries listed below
- pbsv - PacBio structural variant (SV) calling and analysis tools☆132Updated 3 months ago
- Long-read mock community experiments☆103Updated 3 years ago
- RaGOO is no longer supported. Please use RagTag instead: https://github.com/malonge/RagTag☆172Updated 3 years ago
- Generate an interactive dot plot from mummer or minimap alignments☆195Updated last year
- A *fast* tool for BAM/CRAM quality evaluation, intended for long reads☆132Updated last week
- Research release basecalling models and configurations☆104Updated 7 months ago
- ☆197Updated this week
- ☆118Updated 2 months ago
- SALSA: A tool to scaffold long read assemblies with Hi-C data☆183Updated 8 months ago
- SV caller for nanopore data☆91Updated 4 years ago
- Same species annotation lift over pipeline.☆96Updated last year
- Nanopore data assembler☆140Updated 2 years ago
- LongQC is a tool for the data quality control of the PacBio and ONT long reads.☆155Updated last year
- Pipeline for calling structural variations in whole genomes sequencing Oxford Nanopore data☆114Updated 3 years ago
- Pairwise SNP distance matrix from a FASTA sequence alignment☆128Updated 10 months ago
- Find, circularise and annotate mitogenome from PacBio assemblies☆174Updated last week
- A tool to identify, orient, trim and rescue full length cDNA reads☆81Updated 2 years ago
- A tool for Racon polishing of miniasm assemblies☆73Updated 3 years ago
- ☆76Updated 4 years ago
- ☆165Updated 4 months ago
- Workflows and tutorials for LongRead analysis with specific focus on Oxford Nanopore data☆133Updated 3 years ago
- a Bioinformatics Application for Navigating De novo Assembly Graphs Easily☆119Updated last week
- Benchmarking of long-read assembly tools for bacterial whole genomes☆170Updated 3 years ago
- A flexible, scalable, and reproducible pipeline to automate variant calling from raw sequence reads, with lots of bells and whistles.☆95Updated last week
- Tool to plot synteny and structural rearrangements between genomes☆294Updated 2 months ago
- A genome completeness evaluation tool based on miniprot☆190Updated 4 months ago
- Foreign Contamination Screening caller scripts and documentation☆117Updated 2 months ago
- Wally: Visualization of aligned sequencing reads and contigs☆111Updated last month
- Constructing a pangenome gene graph☆179Updated 6 months ago
- Ultra-fast de novo assembler using long noisy reads☆131Updated 3 years ago