rrwick / DeepbinnerLinks
a signal-level demultiplexer for Oxford Nanopore reads
☆126Updated 4 years ago
Alternatives and similar repositories for Deepbinner
Users that are interested in Deepbinner are comparing it to the libraries listed below
Sorting:
- Long-read mock community experiments☆105Updated 4 years ago
- ☆79Updated 4 years ago
- Benchmarking of long-read assembly tools for bacterial whole genomes☆172Updated 4 years ago
- LongQC is a tool for the data quality control of the PacBio and ONT long reads.☆171Updated last year
- SALSA: A tool to scaffold long read assemblies with Hi-C data☆187Updated last year
- RaGOO is no longer supported. Please use RagTag instead: https://github.com/malonge/RagTag☆172Updated 4 years ago
- Pairwise SNP distance matrix from a FASTA sequence alignment☆141Updated last year
- Assemblytics is a bioinformatics tool to detect and analyze structural variants from a genome assembly by comparing it to a reference gen…☆145Updated 2 months ago
- A fast whole-genome aligner based on de Bruijn graphs☆152Updated 3 months ago
- Research release basecalling models and configurations☆114Updated 4 months ago
- A tool to identify, orient, trim and rescue full length cDNA reads☆82Updated 3 years ago
- qcat is a Python command-line tool for demultiplexing Oxford Nanopore reads from FASTQ files.☆81Updated 4 years ago
- Constructing a pangenome gene graph☆195Updated last month
- Create statistic summary of an Oxford Nanopore read dataset☆123Updated 2 years ago
- a Bioinformatics Application for Navigating De novo Assembly Graphs Easily☆147Updated last week
- Analysis components from Oxford Nanopore Research☆95Updated last year
- Program for estimating πN/πS, dN/dS, and other diversity measures from next-generation sequencing data☆117Updated 2 years ago
- Snakemake pipelines for nanopore sequencing data archiving and processing☆91Updated 3 years ago
- ONT assembly and Illumina polishing pipeline☆89Updated 4 years ago
- Dotplot large Genomes in an Interactive, Efficient and Simple way☆108Updated this week
- Modular command-line solution for visualisation, quality control and taxonomic partitioning of genome datasets☆204Updated last year
- ☆123Updated 2 months ago
- snipit: summarise snps relative to your reference sequence☆162Updated 2 weeks ago
- Recentrifuge: robust comparative analysis and contamination removal for metagenomics☆98Updated 5 months ago
- SquiggleKit: A toolkit for manipulating nanopore signal data☆127Updated last year
- Get assembly statistics from FASTA and FASTQ files☆123Updated 2 years ago
- MitoFinder: efficient automated large-scale extraction of mitogenomic data from high throughput sequencing data☆111Updated last month
- Python programs for processing GFF3 files☆100Updated last year
- Workflows and tutorials for LongRead analysis with specific focus on Oxford Nanopore data☆142Updated 2 months ago
- Processing pipeline for pan-genome visulization and exploration☆140Updated 2 years ago