Analysis tool for Nanopore sequencing data
☆11Apr 26, 2024Updated 2 years ago
Alternatives and similar repositories for NanoOK
Users that are interested in NanoOK are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Quality control plotting for long reads☆10May 14, 2024Updated 2 years ago
- Analysis tool for Nanopore sequencing data☆34Apr 15, 2019Updated 7 years ago
- ☆11Feb 21, 2020Updated 6 years ago
- ☆30Aug 2, 2026Updated 2 months ago
- This repository releases the model weights of ANNA16, an end-to-end tool that predicts 16S rRNA gene copy number (GCN) from 16S rRNA sequ…☆12Apr 21, 2026Updated 5 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Subset of fast5 files contained in a fastq, BAM, or SAM file.☆12Mar 29, 2023Updated 3 years ago
- Test data for MultiQC.☆24Oct 6, 2026Updated last week
- ☆29Sep 28, 2021Updated 5 years ago
- a Contig Alignment Tool for Pairwise Assembly Comparison☆12Dec 11, 2019Updated 6 years ago
- The PanGenome Graph Builder☆17Jul 17, 2024Updated 2 years ago
- GenePiper☆12Mar 13, 2022Updated 4 years ago
- The shiny app that accompanies the ngsReports R package☆14Jun 10, 2021Updated 5 years ago
- Open source platform for the complete machine learning lifecycle☆15Aug 25, 2018Updated 8 years ago
- The trashvisor☆12Oct 25, 2020Updated 5 years ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- API for the IGS data portal☆11May 6, 2021Updated 5 years ago
- Estimating evolutionary coevality☆11Jul 16, 2026Updated 3 months ago
- RTOS based on L4 microkernel.☆17Sep 18, 2018Updated 8 years ago
- Detects and blacklists paralog RAD loci analyzed in Stacks or ipyrad, based on the McKinney 2017 method (doi:10.1111/1755-0998.12613)☆10Sep 4, 2019Updated 7 years ago
- Neural Bacteriocin Identifier - a recurrent neural network based software to predict bacteriocins from protein sequences.☆18Mar 25, 2023Updated 3 years ago
- Analysis of (gut) microbiome in Qiime2 and R.☆26Aug 23, 2024Updated 2 years ago
- Some simple scripts to ease management and local basecalling of millions of FAST5 files☆25Nov 25, 2017Updated 8 years ago
- A python tool box for fast and accurate quality control, conversion and alignment of nanopore sequencing data☆20Jun 21, 2022Updated 4 years ago
- ☆16Sep 28, 2026Updated 2 weeks ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- A random forest classifier to identify contigs of plasmid origin in contig and scaffold genomes☆23Apr 20, 2023Updated 3 years ago
- Opal is a toolkit for that enables rapid deployment of scientific applications as Web services☆12Jul 11, 2022Updated 4 years ago
- My Interview recording repo.☆11Mar 22, 2023Updated 3 years ago
- FASTAptamer: A Bioinformatic Toolkit for High-Throughput Sequence Analysis of Combinatorial Selections☆11Oct 7, 2024Updated 2 years ago
- An HMM and Phylogenetic Placement based Ultra-Fast Taxonomy Assignment Tool for 16S sequencing☆11Sep 11, 2026Updated last month
- A toolbox for C++ devs wanting to build geospatial population genetics simulators !☆11May 4, 2025Updated last year
- Fast RNAseq pipeline☆10Mar 17, 2023Updated 3 years ago
- SINA - Reference based multiple sequence alignment☆41Dec 13, 2020Updated 5 years ago
- Analyze a set of genomes with the anvi'o pangenome pipeline☆16Oct 11, 2023Updated 3 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Development of an accurate, inexpensive DIY CMM arm☆26May 4, 2020Updated 6 years ago
- convert PAF format to CHAIN format☆36May 14, 2025Updated last year
- ☆22Oct 4, 2023Updated 3 years ago
- A list of resources for metadata tools, standards and/or development☆12Jun 20, 2018Updated 8 years ago
- Inference of population structure from time-series genotype data☆15Jul 9, 2019Updated 7 years ago
- Embedded OS for IoT☆17May 12, 2021Updated 5 years ago
- Singularity port of HLA typing based on an input exome BAM file and is currently infers infers alleles for the three major MHC class I (…☆15Jan 15, 2017Updated 9 years ago