Alternatives and similar repositories for ASCPsra

Users that are interested in ASCPsra are comparing it to the libraries listed below

• xia-lab / Seq2Fun
  ☆16Updated last month
• cfarkas / annotate_my_genomes
  A genome annotation pipeline that use short and long sequencing reads alignments from animal genomes
  ☆30Updated last year
• kentnf / iTAK
  iTAK
  ☆41Updated last year
• ShawnWx2019 / MetMiner
  MetMiner: A user-friendly pipeline for large-scale plant metabolomics data analysis
  ☆17Updated 9 months ago
• almeidasilvaf / syntenet
  An R package to infer and analyze synteny networks from protein sequences
  ☆30Updated 2 weeks ago
• multiz / multiz
  DNA multiple sequence aligner, official version from Penn State's Miller Lab
  ☆35Updated 6 years ago
• josuebarrera / GenEra
  genEra is a fast and easy-to-use command-line tool that estimates the age of the last common ancestor of protein-coding gene families.
  ☆52Updated 8 months ago
• biocorecrg / ExOrthist
  ExOrthist: a pipeline to extract exon orthologies at any evolutionary distance.
  ☆25Updated 8 months ago
• glarue / reciprologs
  Find reciprocal best hits (DIAMOND or BLAST) between two (or more!) sets of sequences.
  ☆13Updated last year
• FAANG / analysis-TAGADA
  GENE-SWitCH project RNA-Seq analysis pipeline
  ☆28Updated 5 months ago
• hillerlab / CESAR2.0
  ☆28Updated 2 years ago
• ablab / rnaquast
  Quality assessment of de novo transcriptome assemblies from RNA-Seq data
  ☆23Updated 2 months ago
• yhg926 / TQSLE
  TQSLE v1.0 released
  ☆10Updated last year
• TimoLassmann / samstat
  SAMStat displays various properties of next-generation sequencing reads stored in SAM/BAM format.
  ☆24Updated 2 years ago
• ijustwanthaveaname / Genefamily_pipeline
  A pipeline to identify gene family using mutiple tools and scripts.
  ☆11Updated 3 years ago
• hahnlab / CAGEE
  Computational Analysis of Gene Expression Evolution
  ☆43Updated 2 weeks ago
• Rinoahu / SwiftOrtho
  A high performance tool to identify orthologs and paralogs across genomes.
  ☆26Updated 2 years ago
• thackl / seq-scripts
  scripts for sequence and feature conversion, annotation, analysis ...
  ☆28Updated 4 months ago
• lucieabergeron / vertebrate_rate
  Method used in the study on germline mutation rate estimation in 68 species of vertebrates.
  ☆14Updated 3 years ago
• srbehera / DRAGEN_Analysis
  ☆33Updated last year
• nterhoeven / blast2bed
  convert a blast output to a bed file
  ☆12Updated 10 years ago
• pedronachtigall / CodAn
  CDS prediction in transcripts
  ☆23Updated 5 months ago
• lauguma / GWideCodeML
  A Python package for testing evolutionary hypotheses in genome-wide approaches.
  ☆31Updated 4 years ago
• apcamargo / tspex
  tspex: tissue-specificity calculator
  ☆32Updated 2 years ago
• jonassibbesen / rpvg
  Method for inferring path posterior probabilities and abundances from pangenome graph read alignments
  ☆57Updated 7 months ago
• lh3 / treebest
  TreeBeST: Tree Building guided by Species Tree
  ☆14Updated 14 years ago
• junjunlab / GetTransTool
  Extract longest transcript or longest CDS transcript from GTF annotation file or gencode transcripts fasta file.
  ☆20Updated 3 years ago
• simon19891216 / SPDEv1.2
  ☆10Updated 4 years ago
• YuetongXU / CropGBM
  ☆24Updated last week
• SJTU-CGM / HUPAN
  Human pan-genome analysis pipeline
  ☆30Updated 5 years ago