dbrg77 / scATAC_snakemake
Snakemake pipeline for plate scATAC-seq processing
☆26Updated last year
Alternatives and similar repositories for scATAC_snakemake
Users that are interested in scATAC_snakemake are comparing it to the libraries listed below
Sorting:
- ☆49Updated 9 months ago
- ☆33Updated last year
- Mitochondrial Alteration Enrichment and Genome Analysis Toolkit☆19Updated last year
- Single cell epigenomic clustering based on accessibility pattern☆23Updated 2 years ago
- Dynamic Analysis of Alternative Polyadenylation from single-cell RNA-seq (scDaPars)☆15Updated 3 years ago
- single-cell clustering based on alternative splicing landscapes☆20Updated last year
- ☆30Updated 2 years ago
- ☆12Updated 2 years ago
- ☆31Updated 3 months ago
- TF analysis from epigenetic and Hi-C data☆17Updated last month
- Uncertainty-aware quantification of Transposable Elements expression in scRNA-seq☆17Updated last month
- ☆27Updated 3 years ago
- ☆17Updated 4 years ago
- 🍹This repo includes the scripts and analysis notebook for the Droplet Hi-C manuscript☆13Updated last month
- single-cell Hi-C, scHi-C, Hi-C, 3D genome, nuclear organization, tensor decomposition☆19Updated last year
- ☆19Updated last year
- single-cell-Isoform-Sequencing-Analysis-Tools: New and powerful tools brings single-cell RNA sequencing to the Isoform level and single m…☆24Updated 9 months ago
- Analytical tools and pipelines for bulk and single cell epigenomic and human genetic data☆26Updated 4 years ago
- This is a package and a shell script for alternative polyadenylation (APA) analysis of 3' tag single-cell RNA-seq data.☆19Updated 3 years ago
- ☆19Updated 8 months ago
- Code to calculate the Splicing Z Score (SpliZ) for single cell RNA-seq splicing analysis☆33Updated 3 years ago
- ☆32Updated 5 years ago
- SCRIP(Single Cell Regulatory network Inference using ChIP-seq) is a tool for evaluating the binding enrichment of specific TR at single-c…☆19Updated 10 months ago
- single-cell Hi-C, scHi-C, Hi-C, 3D genome, nuclear organization, genome subcompartment☆20Updated last year
- MAnorm2 for Normalizing and Comparing ChIP-seq Samples☆32Updated 2 years ago
- A Deep Learning-Based Model for Quantifying Transposable Elements in Single-Cell Sequencing Data☆27Updated last month
- A rapid and robust plate-based single cell ATAC-seq (scATAC-seq) method☆43Updated 4 years ago
- This repository contains scripts to identify healthy and malignant cells from scRNAseq with CloneTracer and process data from Optimized 1…☆26Updated 6 months ago
- cell type specific, trait-associated gene regulation☆25Updated last month
- ☆16Updated 2 years ago