Alternatives and similar repositories for nanoplexer

Users that are interested in nanoplexer are comparing it to the libraries listed below

• ksahlin / isONcorrect
  Error correction of ONT transcript reads
  ☆58Updated 2 years ago
• treangenlab / methphaser
  MethPhaser: methylation-based haplotype phasing of human genomes
  ☆50Updated 8 months ago
• ksahlin / ultra
  Long-read splice alignment with high accuracy
  ☆63Updated last year
• adamewing / tldr
  Identify and annotate TE-mediated insertions in long-read sequence data
  ☆46Updated 4 months ago
• Parsoa / SVDSS
  Improved structural variant discovery in accurate long reads using sample-specific strings (SFS)
  ☆46Updated 2 months ago
• mcfrith / tandem-genotypes
  ☆49Updated last year
• timplab / nanopore-methylation-utilities
  ☆30Updated 4 years ago
• MeHelmy / princess
  ☆83Updated 8 months ago
• jts / smrest
  Tumour-only somatic mutation calling using long reads
  ☆28Updated last year
• EichlerLab / smrtsv2
  Structural variant caller
  ☆55Updated 3 years ago
• PMBio / pycoMeth
  DNA methylation analysis downstream to Nanopolish for Oxford Nanopore DNA sequencing datasets
  ☆30Updated 2 years ago
• PacificBiosciences / MethBat
  A battery of methylation tools for PacBio HiFi reads
  ☆43Updated last week
• novoalab / modPhred
  modPhred is a pipeline for detection of DNA/RNA modifications from raw ONT data
  ☆16Updated last year
• schatzlab / crossstitch
  Code for phasing SVs with SNPs
  ☆52Updated 5 years ago
• mrvollger / SDA
  Segmental Duplication Assembler (SDA).
  ☆44Updated 2 years ago
• stat-lab / MOPline
  Detection and genotyping of structural variants
  ☆19Updated last month
• kage-genotyper / kage
  Alignment-free genotyper for SNPs and short indels, implemented in Python.
  ☆52Updated 8 months ago
• ConesaLab / SQANTI
  ☆14Updated 2 years ago
• TheJacksonLaboratory / SVE
  ☆51Updated 6 years ago
• TheJacksonLaboratory / Picky
  Structural Variants Pipeline for Long Reads
  ☆44Updated 7 years ago
• vahidAK / NanoMethPhase
  Methylation Phasing for Nanopore Sequencing
  ☆48Updated 2 years ago
• lh3 / etrf
  Exact Tandem Repeat Finder (not a TRF replacement)
  ☆50Updated 6 years ago
• evotools / nf-LO
  A Nextflow workflow to generate lift over files for any pair of genomes
  ☆69Updated 5 months ago
• 1kg-ont-vienna / sv-analysis
  SV analysis of the long-read sequencing data of the 1019 samples of the 1KG-ONT panel
  ☆37Updated 6 months ago
• Nextomics / nextsv
  ☆36Updated last year
• ACEnglish / adotto
  Working space for the GIAB TR benchmarking project
  ☆23Updated last year
• koszullab / hicstuff
  Simple library/pipeline to generate and handle Hi-C data.
  ☆39Updated last year
• tao-bioinfo / readfq
  A simple tool to calculate reads number and total base count in FASTQ file
  ☆21Updated 6 years ago
• Maggi-Chen / FusionSeeker
  A gene fusion caller for long-read transcriptome sequencing data.
  ☆20Updated last year
• rrazaghi / modbamtools
  Set of tools to manipulate and visualize modified base bam files
  ☆57Updated 3 years ago