Tool for demultiplexing Nanopore barcode sequence data
☆25Mar 9, 2026Updated last month
Alternatives and similar repositories for nanoplexer
Users that are interested in nanoplexer are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Indel-aware consensus for aligned BAM☆21Aug 16, 2025Updated 8 months ago
- A (very) fast program for getting statistics about a fastq file, the way I need them, written in Rust☆32Mar 20, 2026Updated 3 weeks ago
- Single Cell Long Read is a suite of tools dedicated to Cell barcode / UMI assignment and analysis of highly multiplexed single cell Nanop…☆79Mar 21, 2023Updated 3 years ago
- ☆16Aug 3, 2018Updated 7 years ago
- ☆13Jan 23, 2020Updated 6 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Methylation Phasing for Nanopore Sequencing☆50Mar 5, 2023Updated 3 years ago
- Sequence Distance Graph framework: graph + reads + mapping + analysis☆25Jun 4, 2022Updated 3 years ago
- An effective alignment tool for long noisy 3C data (e.g. Pore-C and C-walk)☆15Oct 23, 2024Updated last year
- Reconstructs complex variation using Bionano optical mapping data and breakpoint graph data☆19Nov 13, 2023Updated 2 years ago
- Archived version 1.0.2☆16Nov 25, 2019Updated 6 years ago
- RNA-seq workflow: differential transcript usage☆23Aug 20, 2023Updated 2 years ago
- Efficient C functions to compute the summary statistics (flagstats) for sequencing read sets.☆15Dec 16, 2019Updated 6 years ago
- Dual barcode and primer demultiplexing for MinION sequenced reads☆42Jan 19, 2023Updated 3 years ago
- Flip-flop basecaller for Oxford Nanopore reads☆99Jan 13, 2022Updated 4 years ago
- Wordpress hosting with auto-scaling - Free Trial • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Pipeline for annotating genomes using long read transcriptomics data with pinfish☆28Dec 8, 2020Updated 5 years ago
- R package for visualization and exploratory analysis of Oxford Nanopore direct RNA seq based polyA predictions☆13Jun 25, 2024Updated last year
- single-nucleus nanopore reads processing pipeline☆16Aug 16, 2023Updated 2 years ago
- Discovery of communities in Pore-C concatemers☆15Feb 12, 2025Updated last year
- Ultra-fast 5' and 3' demultiplexer☆29Apr 23, 2024Updated last year
- Bioinformatics pipeline for nanopore sequencing data☆11Jan 4, 2019Updated 7 years ago
- Predict MLST directly from uncorrected long reads☆27Oct 31, 2025Updated 5 months ago
- Analysis of sequencing error profile for long read data.☆13Mar 30, 2023Updated 3 years ago
- BitMapperBS: a fast and accurate read aligner for whole-genome bisulfite sequencing☆31Sep 15, 2019Updated 6 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Material for lectures and exercises of the SIB course "Advanced topics in single-cell transcriptomics" (May 2020)☆17May 29, 2020Updated 5 years ago
- Hybrid error correction approach for long reads using overlap graph☆11Sep 26, 2023Updated 2 years ago
- ☆15Jun 27, 2024Updated last year
- a tool for simulating nanopore raw signal data☆77Mar 4, 2026Updated last month
- ☆30Jul 15, 2021Updated 4 years ago
- Structural variant caller for low-depth long-read sequencing data☆48Feb 5, 2026Updated 2 months ago
- Suite of tools for use in genome assembly and consensus. Work in progress.☆31Mar 22, 2021Updated 5 years ago
- A pipeline for Smooth-seq data analysis.☆10Sep 23, 2021Updated 4 years ago
- diploid SNV caller for error-prone reads☆207Apr 26, 2024Updated last year
- Wordpress hosting with auto-scaling - Free Trial • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- A comprehensive pipeline to analyze and visualize structural variants☆20Jan 28, 2020Updated 6 years ago
- SIMD-parallel BLAST X-drop DP on sequence graphs☆24May 30, 2024Updated last year
- DNA methylation analysis downstream to Nanopolish for Oxford Nanopore DNA sequencing datasets☆30Jul 3, 2023Updated 2 years ago
- RADAR is devised to detect and visualize all possible twelve-types of RNA editing events from RNA-seq datasets.☆20Sep 2, 2025Updated 7 months ago
- Ultra-fast methylation calling and event alignment tool for nanopore sequencing data (supports CUDA acceleration)☆163Mar 19, 2026Updated last month
- Detect and phase minor SNVs from long-read sequencing data☆14Dec 28, 2021Updated 4 years ago
- ☆35Feb 20, 2020Updated 6 years ago