katcoyte / MK-SpikeSeqLinks
Protocols, data and code associated with the MK-SpikeSeq method for quantifying the absolute abundances of microbiota samples
☆13Updated 4 years ago
Alternatives and similar repositories for MK-SpikeSeq
Users that are interested in MK-SpikeSeq are comparing it to the libraries listed below
Sorting:
- MiCoP is a method for high-accuracy profiling of viral and fungal metagenomic communities.☆15Updated 3 years ago
- Tools for extracting individual genomes from metagenomes☆17Updated last year
- ☆10Updated 4 years ago
- MetaSNV, a metagenomic SNV calling pipeline.☆20Updated 3 years ago
- Dadaist2 🟨 Highway to R☆13Updated 5 months ago
- R package for microbial pangenomics☆24Updated 3 years ago
- Strain-level abundances estimation in metagenomic samples using variation graphs☆25Updated 2 years ago
- Plot microbiome time series in parallel☆26Updated last year
- Tool for constructing phylogenies and summarizing metabolic characteristics based on curated and custom profile HMMs☆18Updated 3 years ago
- Repository of the integrated mouse gut metagenomic catalog☆20Updated 3 years ago
- Download assembly files from NCBI☆12Updated 2 years ago
- Analyze a set of genomes with the anvi'o pangenome pipeline☆17Updated last year
- From genomes to phenotypes: Traitar3, the microbial trait analyzer (for Python3)☆22Updated last year
- ALDEx_bioc is the working directory for updating bioconductor☆28Updated 3 months ago
- Phylogenetic Organization of Metagenomic Signals (POMS)☆19Updated 2 years ago
- ☆11Updated last year
- An R package for analysis of microbiome relative abundance data using zero inflated beta GAMLSS and meta-analysis across microbiome studi…☆34Updated 4 years ago
- ☆27Updated 7 months ago
- Strain Prediction and Analysis with Representative SEquence☆20Updated 8 months ago
- ☆22Updated 2 years ago
- hAMRoaster is an analysis pipeline that can compare the output of tools for detecting AMR genes and provide metrics of their performance☆22Updated last year
- Please use mmgenome2 instead. Tools for extracting individual genomes from metagenomes☆27Updated 8 years ago
- A pipeline for performing genome-wide association tests for bacterial genomes.☆27Updated 7 years ago
- Annotation of Metabolite Origin via Networks: A tool for predicting putative metabolite origins for microbes or between microbes and host…☆22Updated last year
- MAG Circularization Method☆33Updated 3 years ago
- Tutorial for bacterial GWAS pipline and bugwas, created for Bodega Bay 2016 NGS workshop☆18Updated 9 years ago
- Processing support for Greengenes2☆13Updated 2 years ago
- ☆18Updated 3 years ago
- ☆12Updated last year
- A Perl pipeline for identifying marker genes and build phylogenetic trees for a set of genomes☆13Updated 8 years ago