katcoyte / MK-SpikeSeq
Protocols, data and code associated with the MK-SpikeSeq method for quantifying the absolute abundances of microbiota samples
☆13Updated 3 years ago
Related projects ⓘ
Alternatives and complementary repositories for MK-SpikeSeq
- MiCoP is a method for high-accuracy profiling of viral and fungal metagenomic communities.☆14Updated 2 years ago
- Tools for extracting individual genomes from metagenomes☆17Updated 11 months ago
- MetaSNV, a metagenomic SNV calling pipeline.☆20Updated 2 years ago
- A Hierarchical Approach to Pangenomics Inference☆11Updated 7 months ago
- Tool for constructing phylogenies and summarizing metabolic characteristics based on curated and custom profile HMMs☆18Updated 2 years ago
- Strain-level abundances estimation in metagenomic samples using variation graphs☆25Updated last year
- Analyze a set of genomes with the anvi'o pangenome pipeline☆17Updated last year
- Dadaist2 🟨 Highway to R☆13Updated 9 months ago
- hAMRoaster is an analysis pipeline that can compare the output of tools for detecting AMR genes and provide metrics of their performance☆22Updated 8 months ago
- From genomes to phenotypes: Traitar3, the microbial trait analyzer (for Python3)☆22Updated 4 months ago
- Annotation of Metabolite Origin via Networks: A tool for predicting putative metabolite origins for microbes or between microbes and host…☆21Updated 7 months ago
- Prediction of microbial interactions in complex communities☆12Updated 3 months ago
- Phylogenetic Organization of Metagenomic Signals (POMS)☆19Updated last year
- ☆21Updated last year
- FishTaco (Functional Shifts Taxonomic Contributors) is a metagenomic computational framework that aims to identify the driver taxa of mic…☆23Updated 3 years ago
- Microbiome profiling☆16Updated last month
- ☆10Updated 3 years ago
- Tools for analyzing trees☆14Updated 11 months ago
- Strain Prediction and Analysis with Representative SEquence☆18Updated 3 weeks ago
- Maximum Likelihood Amplicon Pipeline☆22Updated 6 months ago
- BinaRena: Interactive Visualization and Binning of Metagenomic Contigs☆29Updated 3 months ago
- Download assembly files from NCBI☆11Updated last year
- A fast method for analysis of composition of microbiomes☆8Updated 2 years ago
- Snakemake pipeline calculating KEGG orthologue abundance in metagenomic sequence data.☆24Updated last month
- Factorize metagenotypes to infer strains and their abundances☆11Updated last month
- GRIMER performs analysis of microbiome studies and generates a portable and interactive dashboard integrating annotation, taxonomy and me…☆21Updated last year
- A functional profiler for metagenomes using FracMinHash☆13Updated 2 months ago
- Protologgger is a tool for the description of novel taxa by providing taxonomic, functional and ecological insights☆12Updated last year
- Fast and accurate Average Genome Size and 16S rRNA gene Average Copy Number computation in metagenomic data☆14Updated 3 years ago
- ☆15Updated 3 weeks ago