Feature Aggregate Depth Utility
☆12Aug 20, 2024Updated last year
Alternatives and similar repositories for FADU
Users that are interested in FADU are comparing it to the libraries listed below
Sorting:
- Splitting and accelerating the Oxford Nanopore basecaller guppy using CPU with the SLURM job scheduler☆16Jul 1, 2024Updated last year
- An R package to perform systematic quality checks on comparative genomics analyses☆12Jan 12, 2024Updated 2 years ago
- Convert GFF file to GenBank file format while extracting the sequences between the annotated regions☆14Sep 6, 2023Updated 2 years ago
- Scripts to split reference and run mummer in parallel on an SGE cluster☆11Oct 14, 2016Updated 9 years ago
- A Nextflow pipeline for genome and pan-genome annotation☆15Feb 3, 2026Updated 3 weeks ago
- HGNC Comparison of Orthology Predictions (HCOP)☆15Mar 22, 2018Updated 7 years ago
- Dadaist2 🟨 Highway to R☆13Mar 7, 2025Updated 11 months ago
- ☆19Nov 17, 2025Updated 3 months ago
- A smorgasbord of R functions for performing and teaching population genomic analyses☆19Jan 26, 2026Updated last month
- Fast implementation of KofamScan optimized for high-memory systems using PyHMMER☆17Jan 13, 2026Updated last month
- Variant call adjudication☆16Jun 13, 2024Updated last year
- run-length BWT tools for genomic sequences☆19May 19, 2022Updated 3 years ago
- Sequence-independent identification and removal of adapters/systemic contamination in shotgun sequencing data. https://doi.org/10.1093/bi…☆18Apr 4, 2023Updated 2 years ago
- MetaSNV, a metagenomic SNV calling pipeline.☆20Mar 25, 2022Updated 3 years ago
- annotation pipeline for microbial genomes and metagenomes☆18Feb 23, 2018Updated 8 years ago
- Quantifying the significance of genetic variation using probabilistic profile-based methods.☆19Apr 21, 2021Updated 4 years ago
- Snakemake pipeline for running MAJIQ☆23Dec 20, 2023Updated 2 years ago
- TransAnnot - a fast transcriptome annotation pipeline☆20Jan 22, 2025Updated last year
- Annotated Genome Optimization Using Transcriptome Information☆20May 31, 2020Updated 5 years ago
- Paired REad TEXTure Mapper. Converts SAM formatted read pairs into genome contact maps.☆25Feb 11, 2026Updated 2 weeks ago
- Aligner for sequencing data☆18Feb 13, 2018Updated 8 years ago
- a user-friendly and flexible pipeline for prokaryote genome analysis☆69Jan 26, 2026Updated last month
- Fast pairwise transmission inference from single genome and/or metagenomic data☆24Aug 1, 2025Updated 7 months ago
- ☆23Sep 9, 2025Updated 5 months ago
- Neptune: Genomic Signature Discovery☆21Nov 20, 2024Updated last year
- ☆21Jan 3, 2025Updated last year
- ☆29Sep 28, 2021Updated 4 years ago
- R package for microbial pangenomics☆24Apr 12, 2022Updated 3 years ago
- Calculate assocations between genes and traits☆29Mar 10, 2025Updated 11 months ago
- use variant nesting information to flter overlapping sites from vg deconstruct output☆31Jun 12, 2025Updated 8 months ago
- EM based transcript abundance from nanopore reads mapped to a transcriptome with minimap2☆65Oct 11, 2024Updated last year
- Tumour-only somatic mutation calling using long reads☆28Oct 28, 2024Updated last year
- Quality assessment of de novo transcriptome assemblies from RNA-Seq data☆26Nov 14, 2025Updated 3 months ago
- selbal: selection of balances for microbial signatures☆32Feb 24, 2025Updated last year
- Lint Nextflow pipelines in Python.☆11Jan 23, 2025Updated last year
- ☆12Oct 29, 2025Updated 4 months ago
- The Monod package fits CME models to sequencing data.☆33Jan 28, 2026Updated last month
- A comprehensive and intuitive encapsulated OO class system for analyzing bacterial pangenomes in R.☆28Feb 14, 2023Updated 3 years ago
- ALDEx_bioc is the working directory for updating bioconductor☆30May 1, 2025Updated 10 months ago