☆83Oct 27, 2020Updated 5 years ago
Alternatives and similar repositories for longread_umi
Users that are interested in longread_umi are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Workflow to prepare high accuracy single molecule consensus sequences from amplicon data using unique molecular identifiers☆35Feb 27, 2024Updated 2 years ago
- Nanopore UMI-linked consensus sequencing☆18Feb 11, 2021Updated 5 years ago
- Scalable long read self-correction and assembly polishing with multiple sequence alignment☆56Feb 6, 2024Updated 2 years ago
- Analysis components from Oxford Nanopore Research☆99Jul 1, 2026Updated 2 months ago
- INC-Seq: Accurate single molecule reads using nanopore sequencing☆16Sep 11, 2020Updated 6 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- DNA methylation analysis downstream to Nanopolish for Oxford Nanopore DNA sequencing datasets☆34Feb 25, 2021Updated 5 years ago
- Benchmarking of long-read assembly tools for bacterial whole genomes☆172Mar 15, 2021Updated 5 years ago
- Dual barcode and primer demultiplexing for MinION sequenced reads☆42Jan 19, 2023Updated 3 years ago
- High-quality Nanopore-only genome polisher☆71Aug 16, 2024Updated 2 years ago
- ☆21May 24, 2025Updated last year
- Snakemake pipelines for nanopore sequencing data archiving and processing☆92Feb 2, 2022Updated 4 years ago
- Output FASTQ summary statistics in JSON format☆29Oct 30, 2022Updated 3 years ago
- This bartender version could handle arbitrary length of barcode☆34Jan 6, 2024Updated 2 years ago
- Yet Another Chimeric Read Detector☆88Nov 7, 2024Updated last year
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Neural-network consensus polishing and variant calling for Oxford Nanopore sequencing data☆527May 20, 2026Updated 3 months ago
- Strip reads from Oxford Nanopore FAST5 files if they meet certain criteria☆14Jul 29, 2021Updated 5 years ago
- A PyTorch Basecaller for Oxford Nanopore Reads☆436Feb 20, 2026Updated 6 months ago
- Predict plasmids from uncorrected long read data☆41Feb 27, 2026Updated 6 months ago
- GraphMap - A highly sensitive and accurate mapper for long, error-prone reads http://www.nature.com/ncomms/2016/160415/ncomms11307/full/n…☆68Aug 30, 2022Updated 4 years ago
- SquiggleKit: A toolkit for manipulating nanopore signal data☆130Feb 16, 2024Updated 2 years ago
- Northern Arizona SNP Pipeline☆20Oct 29, 2024Updated last year
- Static website for the PH4AGE alliance☆14Oct 27, 2023Updated 2 years ago
- A short analysis of Oxford Nanopore consensus accuracy for bacterial genome assemblies☆60Aug 6, 2019Updated 7 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Rapid determination of appropriate reference genomes.☆104Jan 22, 2025Updated last year
- Toolkit for establishing, updating, and validating GTDB species clusters☆20Sep 8, 2026Updated last week
- Python language bindings for bwa☆12Jul 19, 2026Updated last month
- Long-read mock community experiments☆103Oct 8, 2021Updated 4 years ago
- CFSAN Shigella Typing Pipeline☆15Jun 11, 2026Updated 3 months ago
- VNTR annotation using motif selection☆44May 25, 2026Updated 3 months ago
- Research release basecalling models and configurations☆121Sep 7, 2026Updated last week
- NanoCLUST is an analysis pipeline for UMAP-based classification of amplicon-based full-length 16S rRNA nanopore reads☆118Nov 20, 2023Updated 2 years ago
- software to identify primers that can distinguish genomes☆20Aug 31, 2026Updated 2 weeks ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- quality filtering tool for long reads☆416Sep 17, 2025Updated last year
- Very fast ONT basecaller☆52Jun 17, 2022Updated 4 years ago
- Error correction of ONT transcript reads☆58Sep 9, 2026Updated last week
- Tool to flag foldback and chimeric artifacts in long-read sequence alignment files☆47Jul 1, 2026Updated 2 months ago
- Read contamination removal☆25Jan 24, 2024Updated 2 years ago
- Single Cell Long Read is a suite of tools dedicated to Cell barcode / UMI assignment and analysis of highly multiplexed single cell Nanop…☆80Mar 21, 2023Updated 3 years ago
- This repository contains the code developed for the NanOlympicsMod project.☆12Jan 29, 2024Updated 2 years ago