SorenKarst / longread_umiLinks
☆79Updated 4 years ago
Alternatives and similar repositories for longread_umi
Users that are interested in longread_umi are comparing it to the libraries listed below
Sorting:
- qcat is a Python command-line tool for demultiplexing Oxford Nanopore reads from FASTQ files.☆81Updated 4 years ago
- A fast whole-genome aligner based on de Bruijn graphs☆152Updated 3 months ago
- Long-read mock community experiments☆105Updated 4 years ago
- ONT assembly and Illumina polishing pipeline☆89Updated 4 years ago
- Pipeline to convert a haploid assembly into diploid☆103Updated 8 months ago
- Adapter trimmer for Oxford Nanopore reads using ab initio method☆52Updated 10 months ago
- Synteny Imager☆64Updated 2 months ago
- Research release basecalling models and configurations☆114Updated 4 months ago
- MitoFinder: efficient automated large-scale extraction of mitogenomic data from high throughput sequencing data☆111Updated last month
- Wally: Visualization of aligned sequencing reads and contigs☆118Updated 5 months ago
- Foreign Contamination Screening caller scripts and documentation☆139Updated 6 months ago
- Snakemake pipelines for nanopore sequencing data archiving and processing☆91Updated 3 years ago
- A tool for Racon polishing of miniasm assemblies☆77Updated last month
- Assembly statistic visualisation☆90Updated last year
- A short analysis of Oxford Nanopore consensus accuracy for bacterial genome assemblies☆60Updated 6 years ago
- Interactive quality assessment of genome assemblies☆109Updated 5 months ago
- Program for estimating πN/πS, dN/dS, and other diversity measures from next-generation sequencing data☆117Updated 2 years ago
- a signal-level demultiplexer for Oxford Nanopore reads☆126Updated 4 years ago
- Get assembly statistics from FASTA and FASTQ files☆123Updated 2 years ago
- ☆141Updated 5 months ago
- ☆84Updated 2 years ago
- Sorts amplicons from Nanopore sequencing data based on similarity☆39Updated this week
- Splitting of sequence reads by internal adapter sequence search☆51Updated 2 years ago
- A set of functions to visualise genotypes based on a VCF☆87Updated 3 years ago
- A tool for fetching nanopore fast5 files after filtering via demultiplexing, alignment, or other, to improve downstream processing effici…☆14Updated 6 years ago
- A single fast and exhaustive tool for summary statistics and simultaneous *fa* (fasta, fastq, gfa [.gz]) genome assembly file manipulatio…☆113Updated 4 months ago
- Tools for working with second gen assemblies, fasta sequences, etc☆93Updated 9 years ago
- Structural Variant Identification Method using Genome Assemblies☆124Updated 3 years ago
- Constructing a pangenome gene graph☆195Updated 2 months ago
- A list of software for pangenomics☆131Updated 3 weeks ago