johahi / borzoi-pytorchView external linksLinks
Pytorch implementation of the Borzoi model from Calico, and Flashzoi, a 3x faster Borzoi enhancement.
☆94Nov 13, 2025Updated 3 months ago
Alternatives and similar repositories for borzoi-pytorch
Users that are interested in borzoi-pytorch are comparing it to the libraries listed below
Sorting:
- RNA-seq prediction with deep convolutional neural networks.☆225Aug 28, 2025Updated 5 months ago
- Machine learning methods for DNA sequence analysis.☆57Feb 2, 2026Updated last week
- Decima is a Python library to train sequence models on single-cell RNA-seq data.☆62Feb 5, 2026Updated last week
- Analyses related to the Borzoi paper.☆25Dec 14, 2025Updated 2 months ago
- scooby: Modeling multi-modal genomic profiles from DNA sequence at single-cell resolution.☆54Nov 1, 2025Updated 3 months ago
- Biological sequence analysis for the modern age.☆261Jan 19, 2026Updated 3 weeks ago
- Evaluating genomic sequence models for explaining personalized expression variation☆19Dec 6, 2023Updated 2 years ago
- Code repository for study ''Evaluating the representational power of pre-trained DNA language models for regulatory genomics"☆24Jun 26, 2024Updated last year
- deep learning-inspired explainable sequence model for transcription initiation☆100Mar 3, 2025Updated 11 months ago
- A method for analyzing scATAC-seq experiments.☆34Jun 20, 2025Updated 7 months ago
- This repository hosts a minimal version of a Python API for BPNet.☆55Jan 24, 2026Updated 3 weeks ago
- Implementation of Enformer, Deepmind's attention network for predicting gene expression, in Pytorch☆557Jul 7, 2025Updated 7 months ago
- https://www.biorxiv.org/content/10.1101/2023.07.03.547592v2☆32Jan 22, 2025Updated last year
- gReLU is a python library to train, interpret, and apply deep learning models to DNA sequences.☆314Jan 29, 2026Updated 2 weeks ago
- ☆18Oct 21, 2024Updated last year
- Polygraph evaluates and compares groups of nucleic acid sequences based on their sequence and functional content for effective design of …☆39Mar 27, 2025Updated 10 months ago
- ☆42Updated this week
- ☆25Aug 20, 2024Updated last year
- Saluki, a method to predict mRNA half-lives from sequence☆27Oct 7, 2022Updated 3 years ago
- PyTorch implementation of Basenji2.☆19Apr 29, 2025Updated 9 months ago
- Code repository for the manuscript: Nucleotide dependency analysis of DNA language models reveals genomic functional elements☆25Mar 13, 2025Updated 11 months ago
- A fast dataloader for bigwig files made for machine learning☆29Dec 16, 2025Updated last month
- Toolkit for training hyenaDNA-based autoregressive language models on DNA sequences.☆50Oct 4, 2024Updated last year
- Deep learning models to predict enhancers in different Drosophila embryo tissues☆20Dec 10, 2023Updated 2 years ago
- Annotated sequence data☆11Feb 2, 2025Updated last year
- Genomic sequence preprocessing toolkit☆13Jan 13, 2026Updated last month
- ☆21Dec 10, 2025Updated 2 months ago
- Ledidi turns any machine learning model into a biological sequence editor, allowing you to design sequences with desired properties.☆100Jan 31, 2026Updated 2 weeks ago
- TF MOtif Discovery from Importance SCOres☆165Dec 14, 2025Updated 2 months ago
- ☆19Mar 21, 2024Updated last year
- ☆15Feb 8, 2026Updated last week
- A repository with exploration into using transformers to predict DNA ↔ transcription factor binding☆88Jun 2, 2022Updated 3 years ago
- For fine-tuning Enformer using paired WGS & gene expression data☆26Aug 27, 2025Updated 5 months ago
- Sequential regulatory activity predictions with deep convolutional neural networks.☆462Jan 15, 2026Updated 3 weeks ago
- Jax code for functional genomics ML☆14Mar 5, 2025Updated 11 months ago
- A command-line tool to mitigate homology-based data leakage in sequence-to-expression models☆19Oct 27, 2025Updated 3 months ago
- GREAT algorithm in Python☆14Oct 24, 2022Updated 3 years ago
- Matplotlib style for scientific publications☆14Jan 19, 2026Updated 3 weeks ago
- Scalable sequence-informed embedding of single-cell ATAC-seq data with CellSpace☆41Jan 11, 2025Updated last year