Pytorch implementation of the Borzoi model from Calico, and Flashzoi, a 3x faster Borzoi enhancement.
☆98Jun 10, 2026Updated last month
Alternatives and similar repositories for borzoi-pytorch
Users that are interested in borzoi-pytorch are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- RNA-seq prediction with deep convolutional neural networks.☆256Aug 28, 2025Updated 10 months ago
- scooby: Modeling multi-modal genomic profiles from DNA sequence at single-cell resolution.☆69Apr 1, 2026Updated 3 months ago
- Machine learning methods for DNA sequence analysis.☆64Updated this week
- Decima is a Python library to train sequence models on single-cell RNA-seq data.☆80Jun 4, 2026Updated last month
- Biological sequence analysis for the modern age.☆305Jul 19, 2026Updated last week
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Analyses related to the Borzoi paper.☆29Dec 14, 2025Updated 7 months ago
- Implementation of AlphaGenome, Deepmind's updated genomic attention model☆101Mar 25, 2026Updated 4 months ago
- AlphaGenome PyTorch port☆151Updated this week
- Code repository for study ''Evaluating the representational power of pre-trained DNA language models for regulatory genomics"☆25Jun 26, 2024Updated 2 years ago
- Implementation of Enformer, Deepmind's attention network for predicting gene expression, in Pytorch☆573Jun 26, 2026Updated 3 weeks ago
- ☆44May 7, 2026Updated 2 months ago
- Polygraph evaluates and compares groups of nucleic acid sequences based on their sequence and functional content for effective design of …☆40Mar 27, 2025Updated last year
- Code repository for the manuscript: Nucleotide dependency analysis of DNA language models reveals genomic functional elements☆30Mar 13, 2025Updated last year
- Evaluating genomic sequence models for explaining personalized expression variation☆20Dec 6, 2023Updated 2 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Bias factorized, base-resolution deep learning models of chromatin accessibility (chromBPNet)☆240Jun 9, 2026Updated last month
- https://www.biorxiv.org/content/10.1101/2023.07.03.547592v2☆32Jan 22, 2025Updated last year
- A method for analyzing scATAC-seq experiments.☆33Jun 20, 2025Updated last year
- Repository for modeling PRO-cap data with the BPNet-like model, ProCapNet.☆21Aug 28, 2025Updated 10 months ago
- A fast dataloader for bigwig files made for machine learning☆29Dec 16, 2025Updated 7 months ago
- gReLU is a python library to train, interpret, and apply deep learning models to DNA sequences.☆334Jun 12, 2026Updated last month
- ☆34Jan 27, 2025Updated last year
- Annotated sequence data☆11Feb 2, 2025Updated last year
- TF MOtif Discovery from Importance SCOres☆188May 13, 2026Updated 2 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Genomic sequence preprocessing toolkit☆14Updated this week
- ☆52Mar 22, 2026Updated 4 months ago
- ☆25Aug 20, 2024Updated last year
- Cherimoya is a lightweight sequence-to-function (S2F) model that is small, fast, and easy to use. Now usable by agents.☆39Updated this week
- This repository hosts a minimal version of a Python API for BPNet.☆59Jul 19, 2026Updated last week
- Toolkit for training hyenaDNA-based autoregressive language models on DNA sequences.☆52Oct 4, 2024Updated last year
- deep learning-inspired explainable sequence model for transcription initiation☆106Mar 3, 2025Updated last year
- Dataloader for applying sequence models to personalized genomics☆29Updated this week
- A command-line tool to mitigate homology-based data leakage in sequence-to-expression models☆21Jun 8, 2026Updated last month
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- systematic explanation of attribution-based mechanisms for regulatory genomics☆18May 29, 2026Updated last month
- Benchmarking DNA Language Models on Biologically Meaningful Tasks☆132Oct 31, 2024Updated last year
- A lightweight reimplementation of some of the algorithms in the MEME suite in Python.☆33Jun 3, 2026Updated last month
- Saluki, a method to predict mRNA half-lives from sequence☆27Oct 7, 2022Updated 3 years ago
- ☆19Mar 21, 2024Updated 2 years ago
- Code for improving the performance of sequence-to-expression models for making individual-specific gene expression predictions by fine-tu…☆19Mar 15, 2026Updated 4 months ago
- ☆19Oct 21, 2024Updated last year