aidenlab / JuicerToolsLinks
☆15Updated 3 years ago
Alternatives and similar repositories for JuicerTools
Users that are interested in JuicerTools are comparing it to the libraries listed below
Sorting:
- Comparison of Hi-C Experiments using Structural Similarity.☆28Updated 2 years ago
- HiCorr: a Hi-C data bias-correction pipeline☆28Updated 3 months ago
- DeepLoop robustly identifies enhancer-promoter interactions from low-depth and single-cell Hi-C data☆32Updated 3 months ago
- Blazing fast toolkit to work with .hic and .cool files☆31Updated this week
- Python implementation of HiCRep stratum-adjusted correlation coefficient of Hi-C data with Cooler sparse contact matrix support☆38Updated last year
- dcHiC: Differential compartment analysis for Hi-C datasets☆69Updated last year
- A deep-learning framework for predicting a full range of structural variations from bulk and single-cell contact maps☆59Updated last year
- Python bindings for hictk: read and write .cool and .hic files directly from Python☆15Updated 2 weeks ago
- Single-cell Hi-C data analysis toolbox☆27Updated 3 years ago
- A Library to Explore Chromatin Interaction Patterns for Topologically Associating Domains☆44Updated 2 years ago
- ☆21Updated 4 years ago
- HiC for copy Number variation and Translocation detection☆39Updated 3 years ago
- Interactive multiscale visualization for structural variation in human genomes☆70Updated this week
- snakemake pipeline for Hi-C post-processing☆22Updated last year
- FreeHi-C pipeline for high fidelity Hi-C data simulation.☆11Updated 4 years ago
- R package: TopDom - An efficient and Deterministic Method for identifying Topological Domains in Genomes☆21Updated 2 years ago
- Extract data quickly from Juicebox via straw☆69Updated 3 months ago
- Analysis of gene expression and splicing diversity in a subset of samples from the 1000 Genomes Project, including eQTL and sQTL discover…☆36Updated 11 months ago
- Python reimplementation of hicrep with compatibility for sparse matrices☆18Updated 2 years ago
- Software to compute reproducibility and quality scores for Hi-C data☆50Updated 6 years ago
- Long-read Isoform Quantification and Analysis☆38Updated 3 months ago
- The Isoforms from Single-Cell; Long-read Expression Suite☆31Updated 6 months ago
- Workflows for processing RNA data for germline short variant discovery with GATK v4 and related tools☆77Updated 3 years ago
- IDR☆31Updated 2 years ago
- Clustering TF motif models from multiple species (mostly focused on Drosophila and human) by similarity to remove redundancy☆27Updated 2 years ago
- ☆22Updated last year
- trackplot is a tool for visualizing various next-generation sequencing (NGS) data, including DNA-seq, RNA-seq, single-cell RNA-seq and fu…☆93Updated last month
- A legacy repository. Was replaced by distiller, cooler, and cooltools.☆20Updated 5 years ago
- A script to make downloading of SRA/GEO data easier☆31Updated last year
- Feature-rich Python implementation of the tximport package for gene count estimation.☆36Updated last month