yachimura-lab / scEGOTLinks
☆16Updated 3 weeks ago
Alternatives and similar repositories for scEGOT
Users that are interested in scEGOT are comparing it to the libraries listed below
Sorting:
- Codebase for PRESCIENT (Potential eneRgy undErlying Single Cell gradIENTs) for generative modeling of single-cell time-series.☆52Updated last year
- Non-parametric density inference for single-cell analysis.☆73Updated 8 months ago
- Quasilinear data representations for single-cell omics data analysis☆43Updated 2 years ago
- A Python implementation of the LEMUR algorithm for analyzing multi-condition single-cell RNA-seq data.☆28Updated last year
- A single-cell analysis toolkit to jointly analyze samples from distinct conditions☆34Updated 10 months ago
- Scalable sequence-informed embedding of single-cell ATAC-seq data with CellSpace☆41Updated last year
- Single cell omics biology annotations☆53Updated 9 months ago
- Python package for analysis of multiomic single cell RNA-seq and ATAC-seq.☆67Updated 7 months ago
- scMEGA: Single-cell Multiomic Enhancer-based Gene regulAtory network inference☆44Updated last year
- Covarying neighborhood analysis (CNA) is a method for finding structure in- and conducting association analysis with multi-sample single-…☆56Updated 8 months ago
- ACTIONet single-cell analysis framework☆44Updated last year
- UniTVelo, Temporally Unified RNA Velocity for single cell trajectory inference☆27Updated last year
- Gene regulatory network containing signed transcription factor-target gene interactions☆98Updated 8 months ago
- Gene regulatory network inference for RNA velocity and pseudotime data☆28Updated 3 months ago
- A modular tool for proportion analysis in single-cell sequencing data☆24Updated 4 months ago
- ☆48Updated 2 years ago
- ☆36Updated 11 months ago
- Context specific and dynamic gene regulatory network reconstruction and analysis☆127Updated 2 months ago
- Nextflow pipeline for cross-species integration and assessment of single cell RNA-seq datasets☆42Updated 6 months ago
- ☆56Updated last year
- scDoRI (single-cell Deep multi-Omic Regulatory Inference) is a deep learning model to infer enhancer-mediated gene regulatory networks (e…☆29Updated 5 months ago
- Unified access to several second-generation deconvolution methods☆91Updated last month
- Information-based dimensionality reduction☆29Updated last year
- ☆62Updated 5 months ago
- R implementation of GeneTrajectory☆68Updated last year
- Evaluation of cell-cell interaction methods by integrating single-cell RNA sequencing data with spatial information☆23Updated 3 years ago
- Inference of RNA velocity modules for prediction of cell fates and integration with spatial and regulatory models.☆85Updated 10 months ago
- An R package for single-cell CRISPR screen data analysis emphasizing statistical rigor, massive scalability, and ease of use.☆35Updated 5 months ago
- iterative clustering pipeline of big single cell datasets.☆36Updated 5 months ago
- RNA-velocity informed embeddings for visualizing cellular trajectories☆44Updated 3 years ago