yachimura-lab / scEGOTLinks
☆16Updated this week
Alternatives and similar repositories for scEGOT
Users that are interested in scEGOT are comparing it to the libraries listed below
Sorting:
- Codebase for PRESCIENT (Potential eneRgy undErlying Single Cell gradIENTs) for generative modeling of single-cell time-series.☆49Updated 8 months ago
- Non-parametric density inference for single-cell analysis.☆72Updated 4 months ago
- Quasilinear data representations for single-cell omics data analysis☆43Updated 2 years ago
- ACTIONet single-cell analysis framework☆42Updated last year
- R implementation of GeneTrajectory☆65Updated last year
- A Python implementation of the LEMUR algorithm for analyzing multi-condition single-cell RNA-seq data.☆26Updated 8 months ago
- ☆29Updated 6 months ago
- ☆46Updated last year
- UniTVelo, Temporally Unified RNA Velocity for single cell trajectory inference☆26Updated 10 months ago
- Single cell omics biology annotations☆51Updated 5 months ago
- Scalable sequence-informed embedding of single-cell ATAC-seq data with CellSpace☆41Updated 8 months ago
- scMEGA: Single-cell Multiomic Enhancer-based Gene regulAtory network inference☆40Updated last year
- Cell-type Relationship Analysis Workflow Done Across Distances☆38Updated 3 months ago
- ☆41Updated last month
- ☆13Updated 3 weeks ago
- Python package for analysis of multiomic single cell RNA-seq and ATAC-seq.☆64Updated 2 months ago
- Gene regulatory network containing signed transcription factor-target gene interactions☆87Updated 4 months ago
- RNA-velocity informed embeddings for visualizing cellular trajectories☆45Updated 3 years ago
- Covarying neighborhood analysis (CNA) is a method for finding structure in- and conducting association analysis with multi-sample single-…☆55Updated 3 months ago
- Code to reproduce the analysis of "Decoding gene regulation in the mouse embryo using single-cell multi-omics""☆40Updated 3 years ago
- Bayesian model for RNA velocity estimation of periodic manifolds☆33Updated last year
- Gene regulatory network inference for RNA velocity and pseudotime data☆27Updated 2 weeks ago
- Unified access to several second-generation deconvolution methods☆77Updated 3 weeks ago
- Inference of RNA velocity modules for prediction of cell fates and integration with spatial and regulatory models.☆79Updated 6 months ago
- ☆54Updated 10 months ago
- Low-dimensional Projection of Single Cell Velocity☆28Updated 3 years ago
- ☆45Updated 3 months ago
- A single-cell analysis toolkit to jointly analyze samples from distinct conditions☆32Updated 5 months ago
- Information-based dimensionality reduction☆29Updated 9 months ago
- cTPnet Package☆25Updated 3 years ago