Python script to quickly extract promoter and terminator regions with the NCBI API. Search for the presence of individual pattern or transcription factor responsive elements with manual sequence (IUPAC) or JASPAR API.
☆28Jun 4, 2025Updated 11 months ago
Alternatives and similar repositories for TFinder
Users that are interested in TFinder are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- pyJASPAR: A Pythonic interface to JASPAR transcription factor motifs☆37Feb 10, 2026Updated 3 months ago
- Python bindings for Mosaic.☆14Oct 4, 2024Updated last year
- ☆14Oct 27, 2025Updated 6 months ago
- detectRuns: a R Package for Runs of Homozygosity and Runs of Heterozygosity☆13May 25, 2023Updated 3 years ago
- a tool to evaluate long-read error correction mainly with PacBio High-Fidelity Reads (HiFi reads).☆20Dec 5, 2023Updated 2 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- ☆26Dec 10, 2025Updated 5 months ago
- Reduce genome assembly redundancy using shared mapped k-mer method.☆15Apr 28, 2025Updated last year
- Template for a computational lab notebook using bookdown☆13Mar 16, 2018Updated 8 years ago
- AC-DIAMOND is a DNA-protein alignment tool☆17Oct 11, 2023Updated 2 years ago
- ☆18Jan 2, 2025Updated last year
- An easy-to-use python package can be used for genomic visual analysis☆22Apr 20, 2024Updated 2 years ago
- ☆12Oct 10, 2024Updated last year
- CAAStools is a bioinformatics toolbox that allows the user to identify and validate CAAS on MSA of orthologous proteins.☆23Nov 21, 2023Updated 2 years ago
- ☆28Sep 9, 2025Updated 8 months ago
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- ☆27Mar 30, 2026Updated last month
- ☆10Sep 2, 2025Updated 8 months ago
- streamlit_Extend☆13Jun 21, 2025Updated 11 months ago
- Software Package for Transcription Factor Binding Site (TFBS) Analysis☆35Mar 12, 2025Updated last year
- This python script can be used to detect Whole-genome duplication (WGD) with the dS based method.☆26Feb 22, 2019Updated 7 years ago
- Probabilistic Inference of Molecular Evolution☆10Sep 6, 2021Updated 4 years ago
- Advanced audio player component (audix) for Streamlit with waveform visualization and region selection☆14Jun 24, 2025Updated 11 months ago
- Accurate microsatellite genotypes from high-throughput resequencing data☆24Sep 26, 2014Updated 11 years ago
- GitHub site to accompany Textbook Introduction to Statistical Genetic Data Analysis☆29Mar 12, 2020Updated 6 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- genome annotation (RNAseq and TE) pipeline (draft)☆13Apr 20, 2026Updated last month
- An efficient tool for cross-population fixation index estimation on variant call format files☆11Mar 1, 2026Updated 2 months ago
- R package to explore active transposable elements with RNA-seq data☆21Nov 25, 2022Updated 3 years ago
- SCORPiOs is a synteny-guided gene tree correction pipeline for clades that have undergone a whole-genome duplication event.☆24Sep 23, 2024Updated last year
- Convert RepeatMasker ".out" file into a gff3 with colors!!!☆26Aug 20, 2020Updated 5 years ago
- SYNPHONI is a tool designed for reconstructing the dynamic evolution of syntenic relationships across all scales of phylogenetic distance…☆12May 7, 2023Updated 3 years ago
- GitHub repository for GenErode, a Snakemake workflow for the analysis of whole-genome sequencing data from historical and modern samples …☆31May 18, 2026Updated last week
- Benchmarking scripts for Gaia☆15Apr 10, 2025Updated last year
- From the comparison of two extant genomes and corresponding gene families, PhylDiag detects conserved segments, i.e. segments of chromoso…☆15Aug 7, 2023Updated 2 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Versatile tool for detecting selective sweeps with a variety of ages, strengths, starting allele frequencies, and completeness.