Jumitti / TFinderLinks
Python script to quickly extract promoter and terminator regions with the NCBI API. Search for the presence of individual pattern or transcription factor responsive elements with manual sequence (IUPAC) or JASPAR API.
☆24Updated 7 months ago
Alternatives and similar repositories for TFinder
Users that are interested in TFinder are comparing it to the libraries listed below
Sorting:
- pyJASPAR: A Pythonic interface to JASPAR transcription factor motifs☆34Updated 2 months ago
- trackplot is a tool for visualizing various next-generation sequencing (NGS) data, including DNA-seq, RNA-seq, single-cell RNA-seq and fu…☆99Updated last month
- We developed a protocol of in situ high throughput multi-way contact long read Pore-C sequencing (in situ HiPore-C), a strategy that inte…☆22Updated last year
- A list of alternative splicing analysis resources☆46Updated 9 months ago
- Rapid analysis and visualisation for bulk RNA-seq, psuedo-bulk RNA-seq, GeoMx and Proteomic datasets.☆30Updated last year
- HemTools: a collection of NGS pipelines and bioinformatic analyses☆74Updated 3 weeks ago
- Snakemake wrappers for bioinformatics.☆18Updated 2 years ago
- A tool for accurately detecting actively translating ORFs from Ribo-seq data☆39Updated 11 months ago
- Fork of the KaKs_Calculator2.0 project https://sourceforge.net/projects/kakscalculator2☆13Updated 2 years ago
- polyApipe☆19Updated 11 months ago
- Associated code for EvoWeaver publication☆16Updated 7 months ago
- Analysis pipeline for the GUIDE-seq assay.☆29Updated 5 months ago
- a toolset for mining multi-dimensional features of the translatome with ribosome profiling data☆18Updated 5 months ago
- On-Target and Off-Target Scoring Algorithms for CRISPR gRNAs☆24Updated last month
- read, parse and operate different multiple input file formats with OpenVariant☆14Updated last month
- bioinformatic pipeline for GLORI☆22Updated last year
- A collection of tools to download and process KEGG database☆40Updated 7 years ago
- LncADeep is an ab initio lncRNA identification and functional annotation tool based on deep learning☆29Updated 7 years ago
- Pipeline for generating reference and perturbed sequences for input into predictive models.☆11Updated last year
- circRNA quantification, differential expression analysis and miRNA target prediction of RNA-Seq data☆59Updated last month
- Build Annotation package by using information from KEGG, NCBI, Ensembl☆15Updated 2 years ago
- IsoTools is a python module for Long Read Transcriptome Sequencing (LRTS) analysis.☆27Updated 2 years ago
- A set of Shiny apps to provide interactive enrichment analysis and exploration of results.☆31Updated last month
- ☆27Updated 2 years ago
- Fast and flexible ORF finder☆76Updated 3 years ago
- ☆33Updated 2 months ago
- An unbiased method for genome-wide CBE off-targets assessment☆13Updated 2 years ago
- Quantitative analysis of native tRNA populations using direct RNA nanopore sequencing (Lucas*, Pryszcz* et al., Nat Biotech 2023)☆16Updated last year
- A Computational Workflow for Designing Libraries of sgRNAs for CRISPR-Mediated Base Editing, and much more☆19Updated last year
- A script to make downloading of SRA/GEO data easier☆33Updated 2 years ago