Alternatives and similar repositories for CRISPR_comparison:

Users that are interested in CRISPR_comparison are comparing it to the libraries listed below

• karbalayghareh / ENCODE-E2G
  Python package to predict enhancer-gene interactions supervised on CRISPRi data
  ☆14Updated last year
• johahi / borzoi-pytorch
  Pytorch implementation of the Borzoi model from Calico, and Flashzoi, a 3x faster Borzoi enhancement.
  ☆38Updated last month
• MiraldiLab / maxATAC
  Transcription Factor Binding Prediction from ATAC-seq and scATAC-seq with Deep Neural Networks
  ☆27Updated last week
• pinellolab / EPInformer
  code to run EPInformer for gene expression prediction and gene-enhancer links prioritization
  ☆35Updated 3 months ago
• altoslabs / perturbench
  ☆23Updated last month
• josephreplogle / guide_calling
  Tools for sgRNA calling in direct capture Perturb-seq data
  ☆32Updated last year
• lilab-bcb / harmony-pytorch
  ☆51Updated last year
• zakieh-tayyebi / CellSpace
  Scalable sequence-informed embedding of single-cell ATAC-seq data with CellSpace
  ☆36Updated last month
• FunctionLab / sei-manuscript
  Code for reproducing the Sei manuscript results
  ☆16Updated 3 years ago
• cistrome / MIRA
  Python package for analysis of multiomic single cell RNA-seq and ATAC-seq.
  ☆60Updated 9 months ago
• jmschrei / dragonnfruit
  A method for analyzing scATAC-seq experiments.
  ☆26Updated 4 months ago
• wallet-maker / cytopus
  Single cell omics biology annotations
  ☆49Updated 3 weeks ago
• mcvickerlab / GenVarLoader
  Dataloader for applying sequence models to personalized genomics
  ☆22Updated this week
• GET-Foundation / get_model
  A modular framework for multimodal cross-cell-type transcriptional regulation models
  ☆57Updated last week
• liu-bioinfo-lab / EPCOT
  ☆20Updated last year
• noamteyssier / adpbulk
  pseudobulking on an AnnData object
  ☆28Updated last year
• jiang-q19 / scPRAM
  scPRAM accurately predicts single-cell gene expression perturbation response based on attention mechanism
  ☆13Updated 4 months ago
• jzhoulab / puffin_manuscript
  ☆17Updated 4 months ago
• bernardo-de-almeida / DeepSTARR
  Deep learning model built to quantitatively predict the activities of developmental and housekeeping enhancers from DNA sequence in Droso…
  ☆57Updated last year
• wassermanlab / ExplaiNN
  ExplaiNN: interpretable and transparent neural networks for genomics
  ☆47Updated this week
• rs239 / velorama
  Gene regulatory network inference for RNA velocity and pseudotime data
  ☆22Updated this week
• Genentech / decima
  Decima is a Python library to train sequence models on single-cell RNA-seq data.
  ☆24Updated 4 months ago
• JinLabBioinfo / DeepLoop
  DeepLoop robustly identifies enhancer-promoter interactions from low-depth and single-cell Hi-C data
  ☆31Updated 2 years ago
• liulab-dfci / lisa2
  ☆29Updated 2 years ago
• lcmmichielsen / scHPL
  ☆34Updated 9 months ago
• lanagarmire / Asgard
  ☆41Updated last year
• de-Boer-Lab / random-promoter-dream-challenge-2022
  ☆26Updated 3 weeks ago
• viannegao / ChromaFold
  ☆23Updated 4 months ago
• SUwonglab / PECA
  PECA is a software for inferring context specific gene regulatory network from paired gene expression and chromatin accessibility data
  ☆42Updated last year