Snakemake workflow for comparing E-G links to experimental data
☆23Mar 9, 2026Updated last week
Alternatives and similar repositories for CRISPR_comparison
Users that are interested in CRISPR_comparison are comparing it to the libraries listed below
Sorting:
- Python package to predict enhancer-gene interactions supervised on CRISPRi data☆15Nov 21, 2023Updated 2 years ago
- ☆13Jan 23, 2025Updated last year
- For fine-tuning Enformer using paired WGS & gene expression data☆27Aug 27, 2025Updated 6 months ago
- ☆14Jun 24, 2024Updated last year
- Polygraph evaluates and compares groups of nucleic acid sequences based on their sequence and functional content for effective design of …☆40Mar 27, 2025Updated 11 months ago
- Enformer Celltyping is a tensorflow, multi-headed attention based model that incorporates distal effects of Deoxyribonucleic Acid (DNA) i…☆16Jun 25, 2025Updated 8 months ago
- ☆11Mar 16, 2022Updated 4 years ago
- Pipeline for generating reference and perturbed sequences for input into predictive models.☆11Nov 15, 2024Updated last year
- An R package for plotting GWAS results from the GAPIT package☆14Oct 9, 2025Updated 5 months ago
- ☆13Nov 19, 2021Updated 4 years ago
- a deep generative model for single-cell survival analysis☆16Dec 2, 2025Updated 3 months ago
- Summary-level Unified Method for Modeling Integrated Transcriptome☆10Jun 27, 2023Updated 2 years ago
- GREAT algorithm in Python☆14Oct 24, 2022Updated 3 years ago
- Fine-mapping with infinitesimal effects☆20May 27, 2025Updated 9 months ago
- HiCSR: a Hi-C super-resolution framework for producing highly realistic contact maps☆15Nov 22, 2022Updated 3 years ago
- Create Regional Association Plots☆13Sep 7, 2025Updated 6 months ago
- cEll tyPe enrIChment☆16Dec 11, 2022Updated 3 years ago
- ☆15Dec 8, 2023Updated 2 years ago
- Estimate Bias Due To Sample Overlap In Mendelian Randomization Studies☆11Sep 1, 2022Updated 3 years ago
- ☆14Updated this week
- Open4Gene, A Hurdle Model-based Method for Peak-to-Gene Linkage Analysis☆16Dec 1, 2025Updated 3 months ago
- Code associated with MIX-seq manuscript☆15Aug 26, 2020Updated 5 years ago
- ☆11Oct 14, 2022Updated 3 years ago
- EXpression PREdiction with Summary Statistics Only☆13Dec 10, 2025Updated 3 months ago
- Multi-Omic Strategies for TWAS☆13Mar 27, 2023Updated 2 years ago
- ☆21Dec 10, 2025Updated 3 months ago
- code to run EPInformer for gene expression prediction and gene-enhancer link prediction☆47Jan 19, 2026Updated 2 months ago
- IntelliGenes: AI/ML pipeline for predictive analyses using multi-genomic profiles.☆18Sep 4, 2024Updated last year
- The local version of high-definition likelihood inference of genetic correlations (HDL-L)☆12Aug 8, 2025Updated 7 months ago
- R package for processing of GWAS output☆16Jul 9, 2024Updated last year
- Code for reproducing the Sei manuscript results☆17Jan 25, 2022Updated 4 years ago
- ☆11Apr 5, 2024Updated last year
- ☆47Feb 11, 2026Updated last month
- A modular framework for multimodal cross-cell-type transcriptional regulation models☆102Feb 6, 2026Updated last month
- ☆14Sep 1, 2024Updated last year
- An accurate and efficient colocalization method accounting for multiple causal signals☆13Jun 3, 2024Updated last year
- ☆15Apr 20, 2021Updated 4 years ago
- ☆26Nov 7, 2023Updated 2 years ago
- hJAM is a hierarchical model which unifies the framework of Mendelian Randomization and Transcriptome-wide association studies.☆10Jan 19, 2024Updated 2 years ago