Snakemake workflow for comparing E-G links to experimental data
☆25May 27, 2026Updated 2 months ago
Alternatives and similar repositories for CRISPR_comparison
Users that are interested in CRISPR_comparison are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Python package to predict enhancer-gene interactions supervised on CRISPRi data☆16Nov 21, 2023Updated 2 years ago
- ☆13Jan 23, 2025Updated last year
- Code & documentation for Multiomics and deep learning dissect regulatory syntax in human development (Liu*, Jessa*, Kim*, Ng*, et al, Nat…☆29Jul 17, 2026Updated 3 weeks ago
- A lightweight reimplementation of some of the algorithms in the MEME suite in Python.☆34Jun 3, 2026Updated 2 months ago
- Biological sequence analysis for the modern age.☆308Jul 19, 2026Updated 3 weeks ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- ☆14Jun 24, 2024Updated 2 years ago
- ☆28Dec 10, 2025Updated 8 months ago
- [NPJ AI] A foundation model for individual genome modelling☆27May 9, 2026Updated 3 months ago
- ☆11Mar 16, 2022Updated 4 years ago
- ☆13Nov 19, 2021Updated 4 years ago
- An R package for plotting GWAS results from the GAPIT package☆14Updated this week
- Pipeline for generating reference and perturbed sequences for input into predictive models.☆12Nov 15, 2024Updated last year
- GREAT algorithm in Python☆16Oct 24, 2022Updated 3 years ago
- Summary-level Unified Method for Modeling Integrated Transcriptome☆10Jun 27, 2023Updated 3 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- ☆15Jul 30, 2026Updated last week
- Code to reproduce analysis and figures for 'Genetic mapping of etiologic brain cell types for obesity' (Timshel, eLife 2020)☆14May 20, 2021Updated 5 years ago
- ☆11Apr 5, 2024Updated 2 years ago
- HiCSR: a Hi-C super-resolution framework for producing highly realistic contact maps☆15Nov 22, 2022Updated 3 years ago
- Create Regional Association Plots☆13May 27, 2026Updated 2 months ago
- ☆15Dec 8, 2023Updated 2 years ago
- Estimate Bias Due To Sample Overlap In Mendelian Randomization Studies☆12Sep 1, 2022Updated 3 years ago
- ☆11Oct 14, 2022Updated 3 years ago
- scDoRI (single-cell Deep multi-Omic Regulatory Inference) is a deep learning model to infer enhancer-mediated gene regulatory networks (e…☆35Aug 20, 2025Updated 11 months ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- ☆76May 27, 2026Updated 2 months ago
- EXpression PREdiction with Summary Statistics Only☆14Dec 10, 2025Updated 8 months ago
- Code associated with MIX-seq manuscript☆15Aug 26, 2020Updated 5 years ago
- hJAM is a hierarchical model which unifies the framework of Mendelian Randomization and Transcriptome-wide association studies.☆11Jan 19, 2024Updated 2 years ago
- Fine-mapping with infinitesimal effects☆20May 5, 2026Updated 3 months ago
- Multi-Omic Strategies for TWAS☆13Mar 27, 2023Updated 3 years ago
- Epigenomewide Association Studies (EWAS) with FUnctional Summary-based ImputatiON (FUSION)☆12Mar 24, 2023Updated 3 years ago
- This is an R package to retrieve data from Open Target☆15Jul 30, 2026Updated last week
- The local version of high-definition likelihood inference of genetic correlations (HDL-L)☆14Aug 8, 2025Updated last year
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- For fine-tuning Enformer using paired WGS & gene expression data☆32Aug 27, 2025Updated 11 months ago
- Code for reproducing the Sei manuscript results☆17Jan 25, 2022Updated 4 years ago
- ☆14Sep 1, 2024Updated last year
- An accurate and efficient colocalization method accounting for multiple causal signals☆14Jun 3, 2024Updated 2 years ago
- A modular framework for multimodal cross-cell-type transcriptional regulation models☆109Apr 7, 2026Updated 4 months ago
- ☆15Apr 20, 2021Updated 5 years ago
- ☆58Updated this week