Snakemake workflow for comparing E-G links to experimental data
☆27Sep 10, 2026Updated last month
Alternatives and similar repositories for CRISPR_comparison
Users that are interested in CRISPR_comparison are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Python package to predict enhancer-gene interactions supervised on CRISPRi data☆16Nov 21, 2023Updated 2 years ago
- ☆14Jan 23, 2025Updated last year
- R package for scMultiMap, a statistical method for cell-type-specific mapping of enhancer-gene pairs with single-cell multimodal data☆10Jun 12, 2025Updated last year
- Pipeline to run scE2G☆68Updated this week
- Code & documentation for Multiomics and deep learning dissect regulatory syntax in human development (Liu*, Jessa*, Kim*, Ng*, et al, Nat…☆34Jul 17, 2026Updated 3 months ago
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- Analysis of epigenetic data in Python☆15Oct 22, 2026Updated last week
- GREAT algorithm in Python☆17Oct 24, 2022Updated 4 years ago
- hJAM is a hierarchical model which unifies the framework of Mendelian Randomization and Transcriptome-wide association studies.☆12Jan 19, 2024Updated 2 years ago
- A computational framework☆20Jul 23, 2026Updated 3 months ago
- Biological sequence analysis for the modern age.☆329Oct 20, 2026Updated last week
- Enformer Celltyping is a tensorflow, multi-headed attention based model that incorporates distal effects of Deoxyribonucleic Acid (DNA) i…☆19Jun 25, 2025Updated last year
- A scalable method to infer fate specific gene regulatory network from single cell gene expression data☆10Jan 21, 2025Updated last year
- ☆11Jun 22, 2026Updated 4 months ago
- Code associated with MIX-seq manuscript☆16Aug 26, 2020Updated 6 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- A lightweight reimplementation of some of the algorithms in the MEME suite in Python.☆39Sep 29, 2026Updated last month
- EPInformer workflows for gene-expression prediction from DNA sequence, epigenomic signals, and chromatin contacts.☆64Jul 17, 2026Updated 3 months ago
- Probability Model of Accessible Chromatin of Single cells☆11Aug 14, 2026Updated 2 months ago
- ☆82Updated this week
- Cell type specific enhancer-gene predictions using ABC model (Fulco, Nasser et al, Nature Genetics 2019)☆272Aug 24, 2026Updated 2 months ago
- scDoRI (single-cell Deep multi-Omic Regulatory Inference) is a deep learning model to infer enhancer-mediated gene regulatory networks (e…☆39Aug 15, 2026Updated 2 months ago
- ☆13Oct 10, 2024Updated 2 years ago
- ☆11Mar 16, 2022Updated 4 years ago
- ☆30Dec 10, 2025Updated 10 months ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- [NPJ AI] A foundation model for individual genome modelling☆29May 9, 2026Updated 5 months ago
- ☆14Aug 13, 2026Updated 2 months ago
- ☆23Aug 28, 2026Updated 2 months ago
- Scripts and notebooks used in Akgol Oksuz et al. paper☆12Jan 18, 2021Updated 5 years ago
- Pipeline for generating reference and perturbed sequences for input into predictive models.☆12Nov 15, 2024Updated last year
- Summary-level Unified Method for Modeling Integrated Transcriptome☆10Jun 27, 2023Updated 3 years ago
- ☆11Apr 5, 2024Updated 2 years ago
- SMR-IVW extension of the SMR software☆10Mar 17, 2023Updated 3 years ago
- ☆11Sep 20, 2022Updated 4 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- HiCSR: a Hi-C super-resolution framework for producing highly realistic contact maps☆15Nov 22, 2022Updated 3 years ago
- ☆13Nov 19, 2021Updated 4 years ago
- Simple pipeline to go from an alignment to a neutral model, using the PHAST toolkit☆12Jan 17, 2020Updated 6 years ago
- Genomic sequence preprocessing toolkit☆14Sep 26, 2026Updated last month
- Estimate Bias Due To Sample Overlap In Mendelian Randomization Studies☆12Sep 1, 2022Updated 4 years ago
- ☆14Jul 30, 2026Updated 2 months ago
- Functional Inference of Gene Regulation☆56Jul 5, 2024Updated 2 years ago