Alternatives and similar repositories for CRISPR_comparison

Users that are interested in CRISPR_comparison are comparing it to the libraries listed below

• karbalayghareh / ENCODE-E2G
  Python package to predict enhancer-gene interactions supervised on CRISPRi data
  ☆14Updated last year
• zakieh-tayyebi / CellSpace
  Scalable sequence-informed embedding of single-cell ATAC-seq data with CellSpace
  ☆40Updated 4 months ago
• buenrostrolab / PRINT
  ☆15Updated last month
• pinellolab / EPInformer
  code to run EPInformer for gene expression prediction and gene-enhancer links prioritization
  ☆43Updated 6 months ago
• jmschrei / dragonnfruit
  A method for analyzing scATAC-seq experiments.
  ☆30Updated 3 months ago
• decomverse / ACTIONet
  ACTIONet single-cell analysis framework
  ☆41Updated 8 months ago
• josephreplogle / guide_calling
  Tools for sgRNA calling in direct capture Perturb-seq data
  ☆34Updated last year
• MiraldiLab / maxATAC
  Transcription Factor Binding Prediction from ATAC-seq and scATAC-seq with Deep Neural Networks
  ☆28Updated last month
• mcvickerlab / GenVarLoader
  Dataloader for applying sequence models to personalized genomics
  ☆26Updated this week
• HYsxe / PRINT
  ☆35Updated 9 months ago
• SUwonglab / PECA
  PECA is a software for inferring context specific gene regulatory network from paired gene expression and chromatin accessibility data
  ☆43Updated last year
• const-ae / linear_perturbation_prediction-Paper
  ☆23Updated last month
• cistrome / MIRA
  Python package for analysis of multiomic single cell RNA-seq and ATAC-seq.
  ☆61Updated last year
• lcmmichielsen / scHPL
  ☆35Updated 3 months ago
• buenrostrolab / scPrinter
  ☆40Updated this week
• EngreitzLab / scE2G
  Pipeline to run scE2G
  ☆26Updated last week
• liulab-dfci / lisa2
  ☆30Updated 2 years ago
• czbiohub-sf / tabula-sapiens
  Single Cell Transcriptomics of 25 Human Organs to Create a Tabula Sapiens
  ☆41Updated 2 years ago
• saezlab / greta
  Benchmark of GRNs using the GRETA pipeline
  ☆24Updated 2 months ago
• aertslab / CREsted
  CREsted is a Python package for training sequence-based deep learning models on scATAC-seq data, for capturing enhancer code and for desi…
  ☆39Updated this week
• wallet-maker / cytopus
  Single cell omics biology annotations
  ☆51Updated last month
• BorchLab / Trex
  Using TCR and expression for sequence embedding
  ☆55Updated 4 months ago
• emmijokinen / TCRconv
  TCRconv is a deep learning model for predicting recognition between T cell receptors and epitopes. It uses protBERT embeddings for the TC…
  ☆25Updated 2 years ago
• mcgilldinglab / UNAGI
  Unagi: Deep Generative Model for Deciphering Cellular Dynamics and In-Silico Drug Discovery in Complex Diseases.
  ☆15Updated last month
• qinqian / lisa
  epigenome analysis to rank transcription factors
  ☆30Updated 2 years ago
• lanagarmire / Asgard
  ☆42Updated last year
• johahi / borzoi-pytorch
  Pytorch implementation of the Borzoi model from Calico, and Flashzoi, a 3x faster Borzoi enhancement.
  ☆56Updated 2 weeks ago
• snehamitra / SCARlink
  ☆51Updated 8 months ago
• Genentech / decima
  Decima is a Python library to train sequence models on single-cell RNA-seq data.
  ☆38Updated last week
• yal054 / epiformer
  ☆26Updated last month