Alternatives and similar repositories for CRISPR_comparison

Users that are interested in CRISPR_comparison are comparing it to the libraries listed below

• karbalayghareh / ENCODE-E2G
  Python package to predict enhancer-gene interactions supervised on CRISPRi data
  ☆15Updated 2 years ago
• buenrostrolab / PRINT
  ☆20Updated last week
• HYsxe / PRINT
  ☆37Updated last year
• jmschrei / dragonnfruit
  A method for analyzing scATAC-seq experiments.
  ☆34Updated 6 months ago
• EngreitzLab / scE2G
  Pipeline to run scE2G
  ☆32Updated last month
• zakieh-tayyebi / CellSpace
  Scalable sequence-informed embedding of single-cell ATAC-seq data with CellSpace
  ☆41Updated 11 months ago
• aertslab / CREsted
  CREsted is a Python package for training sequence-based deep learning models on scATAC-seq data, for capturing enhancer code and for desi…
  ☆52Updated last week
• beyondpie / CEMBA_wmb_snATAC
  Whole mouse brain snATAC seq analysis
  ☆27Updated 8 months ago
• yal054 / epiformer
  ☆26Updated 8 months ago
• SUwonglab / PECA
  PECA is a software for inferring context specific gene regulatory network from paired gene expression and chromatin accessibility data
  ☆45Updated 2 months ago
• buenrostrolab / scPrinter
  ☆56Updated last week
• immunogenomics / SCENT
  Single-Cell ENhancer Target gene mapping using multimodal data with ATAC + RNA
  ☆81Updated 8 months ago
• cboix / EPIMAP_ANALYSIS
  Epimap processing and analysis code repository
  ☆33Updated 3 years ago
• dylkot / pyWNN
  Weighted Nearest Neighbors Analysis implemented in Python (pyWNN)
  ☆19Updated 4 years ago
• kkdey / GSSG
  Gene Set + S2G strategy annotations analyzed for disease architecture
  ☆58Updated 3 years ago
• inmybrain / SClineager
  SClineager: a Bayesian hierarchical model that performs lineage tracing of single cells based on genetic markers
  ☆10Updated last year
• weng-lab / BENGI
  ☆18Updated 3 years ago
• josephreplogle / guide_calling
  Tools for sgRNA calling in direct capture Perturb-seq data
  ☆39Updated 2 years ago
• FunctionLab / sei-manuscript
  Code for reproducing the Sei manuscript results
  ☆17Updated 3 years ago
• cistrome / MIRA
  Python package for analysis of multiomic single cell RNA-seq and ATAC-seq.
  ☆66Updated 5 months ago
• zhoujt1994 / scHiCluster
  ☆69Updated last month
• tanlabcode / scATAC-pro
  A comprehensive tool for processing, analyzing and visulizing single cell chromatin accessibility sequencing data
  ☆24Updated last year
• buenrostrolab / FigR
  Functional Inference of Gene Regulation
  ☆49Updated last year
• EraslanBas / PerturbDecode
  An end-to-end computational pipeline for large Perturb-seq screens
  ☆14Updated 7 months ago
• JiaqiLiZju / Nvwa
  ☆36Updated 3 years ago
• noamteyssier / adpbulk
  pseudobulking on an AnnData object
  ☆34Updated 9 months ago
• wallet-maker / cytopus
  Single cell omics biology annotations
  ☆51Updated 8 months ago
• calico / borzoi-paper
  Analyses related to the Borzoi paper.
  ☆24Updated last week
• MiraldiLab / maxATAC
  Transcription Factor Binding Prediction from ATAC-seq and scATAC-seq with Deep Neural Networks
  ☆29Updated 3 weeks ago
• GreenleafLab / scScalpChromatin
  ☆31Updated 2 years ago