Snakemake workflow for comparing E-G links to experimental data
☆23Jan 22, 2026Updated last month
Alternatives and similar repositories for CRISPR_comparison
Users that are interested in CRISPR_comparison are comparing it to the libraries listed below
Sorting:
- Python package to predict enhancer-gene interactions supervised on CRISPRi data☆15Nov 21, 2023Updated 2 years ago
- ☆14Jun 24, 2024Updated last year
- Estimate Bias Due To Sample Overlap In Mendelian Randomization Studies☆11Sep 1, 2022Updated 3 years ago
- For fine-tuning Enformer using paired WGS & gene expression data☆27Aug 27, 2025Updated 6 months ago
- ☆11Oct 14, 2022Updated 3 years ago
- Pipeline for generating reference and perturbed sequences for input into predictive models.☆11Nov 15, 2024Updated last year
- An R package for plotting GWAS results from the GAPIT package☆14Oct 9, 2025Updated 4 months ago
- EXpression PREdiction with Summary Statistics Only☆13Dec 10, 2025Updated 2 months ago
- ☆13Jan 23, 2025Updated last year
- Summary-level Unified Method for Modeling Integrated Transcriptome☆10Jun 27, 2023Updated 2 years ago
- The local version of high-definition likelihood inference of genetic correlations (HDL-L)☆12Aug 8, 2025Updated 6 months ago
- ☆11Mar 16, 2022Updated 3 years ago
- cEll tyPe enrIChment☆16Dec 11, 2022Updated 3 years ago
- hJAM is a hierarchical model which unifies the framework of Mendelian Randomization and Transcriptome-wide association studies.☆10Jan 19, 2024Updated 2 years ago
- ☆13Nov 19, 2021Updated 4 years ago
- Create Regional Association Plots☆13Sep 7, 2025Updated 5 months ago
- a deep generative model for single-cell survival analysis☆16Dec 2, 2025Updated 2 months ago
- An accurate and efficient colocalization method accounting for multiple causal signals☆13Jun 3, 2024Updated last year
- ☆11Apr 5, 2024Updated last year
- R script for generating functionally informed genetic risk scores from TWAS☆11Jul 20, 2023Updated 2 years ago
- Open4Gene, A Hurdle Model-based Method for Peak-to-Gene Linkage Analysis☆16Dec 1, 2025Updated 3 months ago
- R package for processing of GWAS output☆16Jul 9, 2024Updated last year
- ☆15Dec 8, 2023Updated 2 years ago
- Epigenomewide Association Studies (EWAS) with FUnctional Summary-based ImputatiON (FUSION)☆12Mar 24, 2023Updated 2 years ago
- Polygraph evaluates and compares groups of nucleic acid sequences based on their sequence and functional content for effective design of …☆39Mar 27, 2025Updated 11 months ago
- Enformer Celltyping is a tensorflow, multi-headed attention based model that incorporates distal effects of Deoxyribonucleic Acid (DNA) i…☆16Jun 25, 2025Updated 8 months ago
- Multi-Omic Strategies for TWAS☆13Mar 27, 2023Updated 2 years ago
- ☆15Apr 20, 2021Updated 4 years ago
- Stratified squared trans-ethnic genetic correlation☆14May 12, 2022Updated 3 years ago
- ☆14Sep 1, 2024Updated last year
- GREAT algorithm in Python☆14Oct 24, 2022Updated 3 years ago
- Tool for predicting TWAS features (e.g. gene expression) in a target sample☆16Jun 24, 2025Updated 8 months ago
- R package for "Multi-tissue Transcriptome-Wide Association Studies (MTWAS)"☆16Oct 7, 2025Updated 4 months ago
- 3D GWAS across multiple phenotypes☆13Oct 11, 2022Updated 3 years ago
- PUMICE: Prediction Using Models Informed by Chromatin conformations and Epigenomics☆12Oct 6, 2023Updated 2 years ago
- Code associated with MIX-seq manuscript☆15Aug 26, 2020Updated 5 years ago
- GWAS-TWAS (Transcriptome-wide association study)-Pharmacological library integration pipeline☆19Mar 30, 2021Updated 4 years ago
- Fine-mapping with infinitesimal effects☆20May 27, 2025Updated 9 months ago
- Integration of TWAS and Colocalization Analysis☆17Oct 29, 2024Updated last year