Alternatives and similar repositories for CRISPR_comparison

Users that are interested in CRISPR_comparison are comparing it to the libraries listed below

• buenrostrolab / PRINT
  ☆14Updated last week
• karbalayghareh / ENCODE-E2G
  Python package to predict enhancer-gene interactions supervised on CRISPRi data
  ☆14Updated last year
• jmschrei / dragonnfruit
  A method for analyzing scATAC-seq experiments.
  ☆30Updated 2 months ago
• pinellolab / EPInformer
  code to run EPInformer for gene expression prediction and gene-enhancer links prioritization
  ☆42Updated 5 months ago
• FunctionLab / sei-manuscript
  Code for reproducing the Sei manuscript results
  ☆16Updated 3 years ago
• zakieh-tayyebi / CellSpace
  Scalable sequence-informed embedding of single-cell ATAC-seq data with CellSpace
  ☆40Updated 4 months ago
• yal054 / epiformer
  ☆26Updated last month
• EngreitzLab / scE2G
  Pipeline to run scE2G
  ☆24Updated last week
• buenrostrolab / scPrinter
  ☆38Updated 3 weeks ago
• HYsxe / PRINT
  ☆35Updated 8 months ago
• mcgilldinglab / UNAGI
  Unagi: Deep Generative Model for Deciphering Cellular Dynamics and In-Silico Drug Discovery in Complex Diseases.
  ☆15Updated last month
• josephreplogle / guide_calling
  Tools for sgRNA calling in direct capture Perturb-seq data
  ☆33Updated last year
• JinLabBioinfo / DeepLoop
  DeepLoop robustly identifies enhancer-promoter interactions from low-depth and single-cell Hi-C data
  ☆32Updated last month
• saezlab / greta
  Benchmark of GRNs using the GRETA pipeline
  ☆24Updated last month
• Genentech / decima
  Decima is a Python library to train sequence models on single-cell RNA-seq data.
  ☆36Updated 2 weeks ago
• aertslab / CREsted
  CREsted is a Python package for training sequence-based deep learning models on scATAC-seq data, for capturing enhancer code and for desi…
  ☆39Updated 2 weeks ago
• jzhoulab / puffin_manuscript
  ☆17Updated 6 months ago
• DeplanckeLab / ChromatinHD
  High-definition modeling of chromatin + transcriptomics data
  ☆24Updated last month
• MiraldiLab / maxATAC
  Transcription Factor Binding Prediction from ATAC-seq and scATAC-seq with Deep Neural Networks
  ☆28Updated last month
• weng-lab / BENGI
  ☆18Updated 2 years ago
• rargelaguet / mouse_organogenesis_10x_multiome_publication
  Code to reproduce the analysis of "Decoding gene regulation in the mouse embryo using single-cell multi-omics""
  ☆40Updated 2 years ago
• wassermanlab / ExplaiNN
  ExplaiNN: interpretable and transparent neural networks for genomics
  ☆48Updated last month
• EraslanBas / PerturbDecode
  An end-to-end computational pipeline for large Perturb-seq screens
  ☆13Updated 3 weeks ago
• JiaqiLiZju / Nvwa
  ☆34Updated 2 years ago
• shirondru / enformer_fine_tuning
  For fine-tuning Enformer using paired WGS & gene expression data
  ☆15Updated last week
• lhqing / cemba_data
  Mapping pipeline for snmC-seq based technologies.
  ☆20Updated last year
• liu-bioinfo-lab / EPCOT
  ☆22Updated last year
• ketringjoni / SuPreMo
  Pipeline for generating reference and perturbed sequences for input into predictive models.
  ☆11Updated 6 months ago
• wallet-maker / cytopus
  Single cell omics biology annotations
  ☆51Updated 3 weeks ago
• noamteyssier / adpbulk
  pseudobulking on an AnnData object
  ☆30Updated 2 months ago