bernardo-de-almeida / DeepSTARR_embryo

Related projects ⓘ

Alternatives and complementary repositories for DeepSTARR_embryo

• shtoneyan / gopher
  Toolset for training quantitative sequence to function models.
  ☆20Updated 8 months ago
• EraslanBas / PerturbDecode
  An end-to-end computational pipeline for large Perturb-seq screens
  ☆12Updated last year
• KellisLab / scdemon
  single-cell decorrelated module networks
  ☆18Updated 2 months ago
• aertslab / CREsted
  ☆27Updated this week
• theislab / mubind
  Learning motif contributions to cell transitions using sequence features and graphs.
  ☆28Updated 2 months ago
• bernardo-de-almeida / DeepSTARR
  Deep learning model built to quantitatively predict the activities of developmental and housekeeping enhancers from DNA sequence in Droso…
  ☆54Updated last year
• klarman-cell-observatory / perturbseq
  Perturb-seq analysis package
  ☆14Updated 6 months ago
• bernardo-de-almeida / motif-clustering
  Clustering TF motif models from multiple species (mostly focused on Drosophila and human) by similarity to remove redundancy
  ☆23Updated last year
• jzhoulab / puffin_manuscript
  ☆15Updated last month
• hemberg-lab / MicroExonator
  Snakemake pipeline for microexon discovery and quantification
  ☆19Updated last month
• cantinilab / scPRINT-old1
  Single Cell Pretrained Regulatory network INference from Transcripts
  ☆11Updated 2 months ago
• pinellolab / EPInformer
  code to run EPInformer for gene expression prediction and gene-enhancer links prioritization
  ☆31Updated 2 weeks ago
• GreenleafLab / Brain_ASD
  ☆9Updated 3 years ago
• ML4GLand / SeqData
  Annotated sequence data
  ☆11Updated 2 weeks ago
• sjgosai / boda2
  Computational Optimization of DNA Activity (CODA)
  ☆39Updated 2 months ago
• const-ae / transformGamPoi-Paper
  ☆26Updated last year
• open2c / quaich
  snakemake pipeline for Hi-C post-processing
  ☆22Updated 4 months ago
• XueyiDong / LongReadBenchmark
  Benchmarking long-read RNA-seq analysis tools
  ☆25Updated 9 months ago
• jishnu-lab / SLIDE
  ☆24Updated this week
• suinleelab / PAUSE
  Code for paper "Principled feature attribution for unsupervised gene expression analysis"
  ☆11Updated last year
• aertslab / GENIE3
  GENIE3 (GEne Network Inference with Ensemble of trees) R-package
  ☆27Updated 2 years ago
• azizilab / decipher
  A single-cell analysis toolkit to jointly analyze samples from distinct conditions
  ☆20Updated 2 months ago
• viannegao / ChromaFold
  ☆17Updated last month
• goodarzilab / SwitchFinder
  ☆14Updated 4 months ago
• joachimwolff / scHiCExplorer
  Single-cell Hi-C data analysis toolbox
  ☆24Updated 3 years ago
• dylkot / pyWNN
  Weighted Nearest Neighbors Analysis implemented in Python (pyWNN)
  ☆10Updated 3 years ago
• XiaoTaoWang / StripeCaller
  A toolkit for analyzing architectural stripes
  ☆19Updated 3 years ago
• ma-compbio / scGHOST
  single-cell Hi-C, scHi-C, Hi-C, 3D genome, nuclear organization, genome subcompartment
  ☆18Updated 7 months ago
• statbiophys / HLAGuessr
  ☆16Updated last month
• pachterlab / RMEJLBASBMP_2024
  Repository for the paper "The impact of package selection and versioning on single-cell RNA-seq analysis"
  ☆18Updated 5 months ago