Deep learning models to predict enhancers in different Drosophila embryo tissues
☆20Dec 10, 2023Updated 2 years ago
Alternatives and similar repositories for DeepSTARR_embryo
Users that are interested in DeepSTARR_embryo are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆19Dec 15, 2023Updated 2 years ago
- Repository containing the scripts regarding analyses in Zufferey & Tavernari et al.☆10Feb 22, 2021Updated 5 years ago
- Pipeline for Universal Mapping of ATAC-seq☆27Sep 23, 2025Updated last year
- A framework to score and analyze variant effects genome-wide using ChromBPNet models☆21Mar 2, 2026Updated 6 months ago
- ☆10Jan 27, 2025Updated last year
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Computational Optimization of DNA Activity (CODA)☆68Apr 3, 2025Updated last year
- ☆16Sep 13, 2024Updated 2 years ago
- ☆23Jul 27, 2023Updated 3 years ago
- A useful tool for shuffling biological sequences while preserving the k-let counts☆14Apr 23, 2024Updated 2 years ago
- CREsted is a Python package for training sequence-based deep learning models on scATAC-seq data, for capturing enhancer code and for desi…☆82Updated this week
- Machine learning methods for DNA sequence analysis.☆66Sep 18, 2026Updated last week
- ☆12Oct 4, 2021Updated 4 years ago
- ☆18May 20, 2026Updated 4 months ago
- A collection of perl scripts for NGS analysis☆17Oct 2, 2024Updated last year
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Scripts for building computational models of gene regulation with tensorflow☆12Jan 21, 2020Updated 6 years ago
- Elucidating the Utility of Genomic Elements with Neural Nets☆69Dec 2, 2024Updated last year
- conserved non-coding sequence☆18Feb 21, 2022Updated 4 years ago
- A pipeline for identifying conserved topologically associating domain boundaries among multiple species.☆17Jun 17, 2025Updated last year
- Clone of the Bioconductor repository for the MouseGastrulationData package.☆13Jan 24, 2024Updated 2 years ago
- ☆17Jul 29, 2023Updated 3 years ago
- ☆12Oct 10, 2024Updated last year
- ☆19Oct 21, 2024Updated last year
- a computational tool for analyzing single cell Hi-C data☆27Apr 23, 2024Updated 2 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Evaluating genomic sequence models for explaining personalized expression variation☆20Dec 6, 2023Updated 2 years ago
- deep learning-inspired explainable sequence model for transcription initiation☆108Mar 3, 2025Updated last year
- Pytorch implementation of the Borzoi model from Calico, and Flashzoi, a 3x faster Borzoi enhancement.☆99Jun 10, 2026Updated 3 months ago
- ☆17Dec 17, 2025Updated 9 months ago
- Analysis of data produced by cvapipe for the variance paper☆24Dec 23, 2024Updated last year
- 4C-seq processing pipeline☆28Mar 17, 2025Updated last year
- Introme prioritises coding and noncoding splice-altering variants for clinical variant interpretation☆24Aug 27, 2026Updated last month
- ☆19Mar 21, 2024Updated 2 years ago
- ☆13Nov 19, 2021Updated 4 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- The full training script for Enformer - Tensorflow Sonnet☆18Apr 18, 2022Updated 4 years ago
- Statistically Significant loops from HiChIP data☆49Apr 17, 2024Updated 2 years ago
- Causal inference, differential expression, and co-expression for scRNA-seq☆21Jun 11, 2026Updated 3 months ago
- Evolution-inspired data augmentations for PyTorch-based models for regulatory genomics☆25Jun 3, 2025Updated last year
- ☆13Feb 2, 2026Updated 7 months ago
- ☆16Dec 21, 2022Updated 3 years ago
- A short tutorial to using DL and keras for genomics with sequence data.☆16Dec 3, 2020Updated 5 years ago