GreenleafLab / NucleoATACRLinks
R package for reading in & working with NucleoATAC outputs
☆26Updated 7 years ago
Alternatives and similar repositories for NucleoATACR
Users that are interested in NucleoATACR are comparing it to the libraries listed below
Sorting:
- A toolkit for working with ATAC-seq data.☆24Updated last week
- Bead-based single-cell atac processing☆33Updated 4 years ago
- Allele-Specific Expression by Single-Cell RNA Sequencing☆29Updated 5 years ago
- A Package For Predicting The Disruptiveness Of Single Nucleotide Polymorphisms On Transcription Factor Binding Sites.☆31Updated last year
- ☆42Updated 3 years ago
- Algorithm for detecting alternative splicing in a population of single cells. See details in Welch et al., Nucleic Acids Research 2016: h…☆23Updated 9 years ago
- ☆15Updated 2 years ago
- Lightweight Iterative Gene set Enrichment in R☆57Updated last year
- A Spike-in Free ChIP-Seq Normalization Approach for Detecting Global Changes in Histone Modifications☆41Updated 3 years ago
- a peak-calling and differential analysis tool for replicated ChIP-Seq data☆37Updated 3 years ago
- JAMM Peak Finder for Sequencing Datasets☆30Updated 5 years ago
- Package Homepage: http://bioconductor.org/packages/devel/bioc/html/annotatr.html Bug Reports: https://support.bioconductor.org/p/new/post…☆27Updated 3 months ago
- Software Package for Transcription Factor Binding Site (TFBS) Analysis☆32Updated 10 months ago
- processes GoT amplicon data and generates a table of metrics☆32Updated 3 years ago
- Relative Abundance of Transcripts: An R package for the detection of Differential Transcript isoform Usage.☆34Updated 3 years ago
- Machine learning algorithm to predict biological pathway relationships based on functional genomics networks☆20Updated 7 years ago
- RepEnrich is a method to estimate repetitive element enrichment using high-throughput sequencing data.☆28Updated 3 years ago
- ChIP-seq DC and QC Pipeline☆36Updated 4 years ago
- Dirichlet Process based methods for subclonal reconstruction of tumours☆31Updated 10 months ago
- Tutorials covering various topics in genomic data analysis.☆16Updated 7 years ago
- Parse TF motifs from public databases, read into R, and scan using 'rtfbs'.☆23Updated 7 years ago
- Single Cell Analysis Automated Workflow☆28Updated 2 years ago
- Detecting intron retention from RNA-Seq experiments☆55Updated last year
- Differential ATAC-seq toolkit☆28Updated 2 years ago
- A tool for annotation-free differential analysis of tissue-specific pre-mRNA alternative splicing patterns☆30Updated 2 years ago
- ☆23Updated 6 years ago
- ☆17Updated 7 years ago
- A preprocessing and QC pipeline for HiChIP data☆40Updated 3 years ago
- GTEx analysis scripts☆20Updated 8 years ago
- An R package for studying mutational signatures and structural variant signatures along clonal evolution in cancer.☆72Updated last year