R package for reading in & working with NucleoATAC outputs
☆26Oct 13, 2018Updated 7 years ago
Alternatives and similar repositories for NucleoATACR
Users that are interested in NucleoATACR are comparing it to the libraries listed below
Sorting:
- nucleosome calling using ATAC-seq☆110Dec 20, 2020Updated 5 years ago
- A toolkit for working with ATAC-seq data.☆24Jan 22, 2026Updated last month
- ☆15Oct 19, 2023Updated 2 years ago
- Normalization and difference calling for Next Generation Sequencing (NGS) data via joint multinomial modeling.☆11Oct 8, 2021Updated 4 years ago
- ATAC-seq and DNase-seq processing pipeline☆165Jun 21, 2022Updated 3 years ago
- R package with motifs for use with chromVAR☆29Nov 17, 2017Updated 8 years ago
- A tool for Read Multi-Mapper Resolution☆24Feb 15, 2017Updated 9 years ago
- Applying IDR analysis to Homer peaks.☆15May 8, 2020Updated 5 years ago
- R package for DNA methylation analysis☆20Aug 18, 2024Updated last year
- Ritornello is a high fidelity control free ChIP-seq peak calling algorithm☆13Aug 23, 2018Updated 7 years ago
- WALT is a read mapping program for bisulfite sequencing DNA methylation studies.☆17Aug 23, 2022Updated 3 years ago
- software for analysis of chromatin feature occupancy profiles from high-throughput sequencing data☆18Nov 26, 2019Updated 6 years ago
- A program for summarising CpG methylation patterns☆20Sep 9, 2016Updated 9 years ago
- ☆10Jan 19, 2019Updated 7 years ago
- Differential analysis for ChIP-seq with biological replicates☆35Jan 5, 2022Updated 4 years ago
- SNAPR: a bioinformatics pipeline for efficient and accurate RNA-seq alignment and analysis☆25Apr 7, 2015Updated 10 years ago
- ☆21Dec 10, 2025Updated 3 months ago
- Regulatory Genomics Toolbox: Python library and set of tools for the integrative analysis of high throughput regulatory genomics data.☆111Nov 3, 2025Updated 4 months ago
- The code for Daugherty, et al 2017 - Chromatin accessibility dynamics reveal novel functional enhancers in C. elegans☆11Aug 24, 2017Updated 8 years ago
- JAMM Peak Finder for Sequencing Datasets☆30Mar 12, 2020Updated 6 years ago
- Hotspot is a program for identifying genomic regions of local enrichment of short-read sequence tags.☆16Apr 12, 2014Updated 11 years ago
- A fast and efficient short read mapper☆13Nov 7, 2021Updated 4 years ago
- Processing and analysis of data coming from Illumina sequencing machines☆10Mar 14, 2026Updated last week
- NGS perl modules☆11Mar 13, 2026Updated last week
- Single-cell Bisulfite Sequencing Data Mapping☆12May 19, 2021Updated 4 years ago
- *UNOFFICIAL, UNMAINTAINED and OUTDATED*: This was an unofficial archive of GMAP-GSNAP releases. Please use the original website for curr…☆33Nov 1, 2015Updated 10 years ago
- AlignerBoost is a generalized software toolkit for boosting Next-Gen sequencing mapping precision using a Bayesian based mapping quality …☆11Mar 1, 2022Updated 4 years ago
- A preprocessing pipeline for ChIP-seq, including alignment, quality control, and visualization.☆27Apr 24, 2017Updated 8 years ago
- yaha: a flexible, sensitive and accurate DNA alignment tool designed to find optimal split-read mappings on single-end queries from 100bp…☆20Dec 6, 2017Updated 8 years ago
- Pipeline to find transcription factor footprints in DNase-seq or ATAC-seq datasets☆12Nov 24, 2018Updated 7 years ago
- toolbox for analysing BS-seq data, advance features in SNV, ASM and DMR☆67Dec 22, 2023Updated 2 years ago
- A deletion finder through re-aligning the whole soft-clipping read☆12Jul 2, 2016Updated 9 years ago
- gvcf aggregation tool☆12Feb 7, 2018Updated 8 years ago
- ENCODE Uniform processing pipeline for ChIP-seq☆124Mar 23, 2020Updated 5 years ago
- Simple and quick FastQ and FastA tool for file reading and conversion☆17Jul 11, 2014Updated 11 years ago
- Analysing Capture Seq Count Data☆13Jun 11, 2018Updated 7 years ago
- RNA-Seq Unified Mapper☆27Sep 9, 2022Updated 3 years ago
- a peak-calling and differential analysis tool for replicated ChIP-Seq data☆37May 18, 2022Updated 3 years ago
- ☆12Jan 21, 2016Updated 10 years ago