GreenleafLab / NucleoATACRLinks
R package for reading in & working with NucleoATAC outputs
☆26Updated 6 years ago
Alternatives and similar repositories for NucleoATACR
Users that are interested in NucleoATACR are comparing it to the libraries listed below
Sorting:
- A toolkit for working with ATAC-seq data.☆24Updated last year
- A Package For Predicting The Disruptiveness Of Single Nucleotide Polymorphisms On Transcription Factor Binding Sites.☆29Updated last year
- Allele-Specific Expression by Single-Cell RNA Sequencing☆29Updated 4 years ago
- Bead-based single-cell atac processing☆33Updated 3 years ago
- ☆15Updated last year
- Algorithm for detecting alternative splicing in a population of single cells. See details in Welch et al., Nucleic Acids Research 2016: h…☆22Updated 9 years ago
- ChIP-seq DC and QC Pipeline☆35Updated 4 years ago
- RepEnrich is a method to estimate repetitive element enrichment using high-throughput sequencing data.☆28Updated 3 years ago
- Package Homepage: http://bioconductor.org/packages/devel/bioc/html/annotatr.html Bug Reports: https://support.bioconductor.org/p/new/post…☆27Updated last month
- JAMM Peak Finder for Sequencing Datasets☆29Updated 5 years ago
- a peak-calling and differential analysis tool for replicated ChIP-Seq data☆36Updated 3 years ago
- A Spike-in Free ChIP-Seq Normalization Approach for Detecting Global Changes in Histone Modifications☆33Updated 3 years ago
- Pipeline to find transcription factor footprints in DNase-seq or ATAC-seq datasets☆12Updated 6 years ago
- processes GoT amplicon data and generates a table of metrics☆31Updated 3 years ago
- R package with motifs for use with chromVAR☆28Updated 7 years ago
- binned motif enrichment analysis and visualisation☆41Updated 3 weeks ago
- Preprocessing of single-cell RNA-Seq (deprecated)☆62Updated 6 years ago
- Filtering of PDX samples for mouse derived reads☆28Updated 2 years ago
- Tutorials covering various topics in genomic data analysis.☆16Updated 6 years ago
- Machine learning algorithm to predict biological pathway relationships based on functional genomics networks☆20Updated 6 years ago
- SPP - R package for analysis of ChIP-seq and other functional sequencing data☆43Updated 4 years ago
- deepStats: a stastitical toolbox for deeptools and genomic signals☆34Updated 4 years ago
- ☆38Updated 2 years ago
- A small R package to make sequencing read coverage plots in R.☆39Updated 3 years ago
- A tool for annotation-free differential analysis of tissue-specific pre-mRNA alternative splicing patterns☆28Updated 2 years ago
- Functional genomics and genome-wide association studies☆67Updated 7 years ago
- Differential ATAC-seq toolkit☆27Updated last year
- GREAT Analysis - Functional Enrichment on Genomic Regions☆90Updated 5 months ago
- Lightweight Iterative Gene set Enrichment in R☆57Updated 10 months ago
- Exon-Intron Split Analysis (EISA) in R☆16Updated 3 months ago