linnarsson-lab / fetal_brain_multiomicsLinks
Supplementary files and notebooks to recreate figures.
☆21Updated 3 months ago
Alternatives and similar repositories for fetal_brain_multiomics
Users that are interested in fetal_brain_multiomics are comparing it to the libraries listed below
Sorting:
- Single-Cell Analysis of Inter-Individual Variability by Interpretable Tensor Decomposition☆63Updated last year
- Niche Interactions and Cellular Heterogeneity in Extracellular Signaling☆57Updated 2 weeks ago
- Integrative and Reference-Informed Spatial Domain Detection for Spatial Transcriptomics☆40Updated 9 months ago
- sEV-containing droplet identification in scRNA-seq data (SEVtras)☆26Updated 8 months ago
- Trajectory inference across multiple conditions with condiments: differential topology, progression, differentiation, and expression☆29Updated 11 months ago
- ☆30Updated 6 months ago
- We describe a transcriptional reference map of human natural killer (NK) cells based on analysis of scRNA-seq data from both blood and ti…☆13Updated last year
- ☆10Updated 2 years ago
- Identifying external communication signals using single-cell transcriptomics data☆20Updated last year
- NicheDE is a method that detects context dependent changes in gene expression in spatial transcriptomic data.☆23Updated 5 months ago
- Data available at: https://www.dropbox.com/sh/jh4s57kgbb0rnxe/AABoMK466cGc1OKsOuFN10wca?dl=0 and https://nyulangone-my.sharepoint.com//g/…☆31Updated 3 years ago
- Inferring allele-specific copy number aberrations and tumor phylogeography from spatially resolved transcriptomics☆41Updated 2 months ago
- A minimal gene set characterizes multiple classes of tumor-specific TIL among different cancer types☆11Updated 8 months ago
- Code for major analyses in "Integrative spatial analysis reveals a multi-layered organization of glioblastoma" paper☆52Updated 10 months ago
- Estimation of Single-Cell Potency with Single Cell Entropy☆43Updated 2 years ago
- ☆31Updated 3 weeks ago
- Code used to create the core and extended GBmap, including downstream analyses (cell-cell interactions, spatial transcriptomics deconvolu…☆64Updated 2 years ago
- Code for single-cell eQTL analysis of memory T cell data in Nathan, et al. bioRxiv (2021)☆20Updated 2 years ago
- ☆31Updated 8 months ago
- Camiel's scATAC-seq analysis pipeline☆13Updated last year
- Single-Cell Inference of Class Switch Recombination☆19Updated 2 months ago
- R package for decontaminating the spot swapping effect and recovering true expression in spatial transcriptomics data☆33Updated last year
- Repository for all R scripts used for the bioinformatic analyses of the mouse and human 10x Genomics Visium spatially resolved transcript…☆29Updated last year
- Independent Component Analysis decipher functional modules for better cell clustering and annotation☆17Updated 3 years ago
- Aligning gene expression trajectories of single-cell reference and query systems☆76Updated 3 months ago
- ☆16Updated last year
- R and MATLAB scripts for MAGICAL☆11Updated last year
- Code to reproduce the analysis of "Decoding gene regulation in the mouse embryo using single-cell multi-omics""☆40Updated 3 years ago
- ☆14Updated 2 years ago
- Publically accessible code for DIISCO method☆12Updated last month