linnarsson-lab / fetal_brain_multiomicsLinks
Supplementary files and notebooks to recreate figures.
☆21Updated 4 months ago
Alternatives and similar repositories for fetal_brain_multiomics
Users that are interested in fetal_brain_multiomics are comparing it to the libraries listed below
Sorting:
- sEV-containing droplet identification in scRNA-seq data (SEVtras)☆26Updated 10 months ago
- ☆30Updated 7 months ago
- Trajectory inference across multiple conditions with condiments: differential topology, progression, differentiation, and expression☆29Updated last year
- ☆10Updated 2 years ago
- Niche Interactions and Cellular Heterogeneity in Extracellular Signaling☆57Updated last month
- ☆34Updated 2 months ago
- Independent Component Analysis decipher functional modules for better cell clustering and annotation☆17Updated 3 years ago
- Spatial transcriptomics of heart tissue☆28Updated 3 years ago
- Estimation of Single-Cell Potency with Single Cell Entropy☆43Updated 2 years ago
- Identifying external communication signals using single-cell transcriptomics data☆20Updated last year
- Single-cell RNA-seq data-based inference of multilayer inter- and intra-cellular signaling networks☆29Updated 4 years ago
- Single-Cell Analysis of Inter-Individual Variability by Interpretable Tensor Decomposition☆62Updated last year
- Integrative and Reference-Informed Spatial Domain Detection for Spatial Transcriptomics☆41Updated 10 months ago
- ☆16Updated last year
- We describe a transcriptional reference map of human natural killer (NK) cells based on analysis of scRNA-seq data from both blood and ti…☆14Updated last year
- ☆31Updated 10 months ago
- ☆22Updated 2 years ago
- Code used to analyze single cell RNA and ATAC sequencing in developing human brain☆34Updated 3 years ago
- MERCI for tracing of mitochondrion transfer between single cancer and T cells☆26Updated last year
- Data available at: https://www.dropbox.com/sh/jh4s57kgbb0rnxe/AABoMK466cGc1OKsOuFN10wca?dl=0 and https://nyulangone-my.sharepoint.com//g/…☆31Updated 3 years ago
- STRIDE (Spatial TRanscRIptomics DEconvolution by topic modelling) is a cell-type deconvolution tool for spatial transcriptomics by using …☆26Updated last year
- Code for major analyses in "Integrative spatial analysis reveals a multi-layered organization of glioblastoma" paper☆53Updated 11 months ago
- Unsupervised Inference of Developmental Directions for Single Cells☆22Updated last year
- R and MATLAB scripts for MAGICAL☆11Updated last year
- Single-Cell Inference of Class Switch Recombination☆20Updated last month
- NicheDE is a method that detects context dependent changes in gene expression in spatial transcriptomic data.☆23Updated 6 months ago
- Inferring allele-specific copy number aberrations and tumor phylogeography from spatially resolved transcriptomics☆44Updated 4 months ago
- Code for the spatial transcriptomic paper on IPF lungs☆19Updated last year
- A minimal gene set characterizes multiple classes of tumor-specific TIL among different cancer types☆11Updated 9 months ago
- Robust identification of perturbed cell types in single-cell RNA-seq data☆35Updated last month