kuleshov / ProbHapLinks
Probabilistic single-individual haplotyping
☆10Updated 6 years ago
Alternatives and similar repositories for ProbHap
Users that are interested in ProbHap are comparing it to the libraries listed below
Sorting:
- Scripts for analyses and figures for SNP STR Imputation manuscript☆14Updated 7 years ago
- The integrated pipeline for Indel detection☆17Updated 7 years ago
- Viral quasispecies assembly via maximal clique finding. A method to reconstruct viral haplotypes and detect large insertions and deletion…☆26Updated 7 years ago
- tools for error correction and working with long read data☆44Updated 11 years ago
- Detection of structural variants in cancer mate-pair and paired-end data☆13Updated 6 years ago
- Population Reference Graphs for the HLA and MHC.☆35Updated 7 years ago
- A series of tools and pipelines for genotyping MHC / HLA genes and alleles using SMRT Sequencing☆22Updated 9 years ago
- RNF framework for NGS: simulation of reads, evaluation of mappers, conversion of RNF-compliant data.☆14Updated 3 months ago
- Analysis toolkit and programming library for k-mer profiles☆31Updated 4 years ago
- A tool set to assess the quality of the per read phasing and reduce the errors.☆13Updated 5 years ago
- Human pan-genome analysis pipeline☆31Updated 5 years ago
- Jitterbug is a bioinformatic software that predicts insertion sites of transposable elements in a sample sequenced by short paired-end re…☆17Updated 9 years ago
- Toolkit for calling and analyzing de novo STR mutations☆17Updated 2 years ago
- A software for discovery, genotyping and characterization of structural variants☆22Updated last year
- Simultaneous detection of SNPs and Indels using a 16-genotype probabilistic model☆27Updated 2 years ago
- Stupid Simple Structural Variant View☆25Updated 9 years ago
- ☆14Updated 8 years ago
- Mutation rate analysis of autosomal loci☆15Updated 5 years ago
- Genome-wide reconstruction of complex structural variants☆39Updated 3 years ago
- Adaptive haplotype assembly for efficiently leveraging high coverage in long reads☆13Updated 7 years ago
- yaha: a flexible, sensitive and accurate DNA alignment tool designed to find optimal split-read mappings on single-end queries from 100bp…☆20Updated 8 years ago
- Accurate Typing of Human Leukocyte Antigen (HLA) by Oxford Nanopore Sequencing☆17Updated 8 years ago
- PopSTR - A Population based microsatellite genotyper☆32Updated 2 years ago
- ☆12Updated 10 years ago
- phy-mer☆11Updated 8 years ago
- Software for detecting transposable element insertions from next-generation sequencing data☆14Updated 4 years ago
- GRAph-based Finding of Individual Motif Occurrences☆31Updated last year
- Somatic (mosaic) SNV caller for 10X Genomics data using random forest classification and feature-based filters☆23Updated 6 years ago
- RCK: Reconstruction of clone- and haplotype-specific Cancer Karyotypes☆18Updated 5 years ago
- a string to graph aligner☆41Updated 9 years ago