Genome-wide de novo genotyping with 2bRAD
☆23May 22, 2025Updated 9 months ago
Alternatives and similar repositories for 2bRAD_denovo
Users that are interested in 2bRAD_denovo are comparing it to the libraries listed below
Sorting:
- ☆12Nov 23, 2020Updated 5 years ago
- An innovative GWAS procedure for studies on germplasm population and plant breeding☆14Nov 16, 2020Updated 5 years ago
- ☆29Mar 5, 2024Updated 2 years ago
- Mutation rate analysis of autosomal loci☆15Jun 25, 2020Updated 5 years ago
- Detects Outliers and plots genomic clines from BGC output, and extends the plotting functionality of INTROGRESS to Correlate genomic clin…☆16Oct 12, 2024Updated last year
- Tools for haplotype-wise reconstruction of pseudomolecules☆22Sep 5, 2025Updated 6 months ago
- Reduction of Althaps and Duplicate Contigs for Improved Hi-C Scaffolding☆20Mar 3, 2025Updated last year
- ☆20Aug 10, 2022Updated 3 years ago
- This repository contains the code and manual for the R package delimitR.☆17Apr 19, 2022Updated 3 years ago
- ☆12Feb 16, 2025Updated last year
- association analysis of distance matrices using gradient forest approach☆16Oct 7, 2025Updated 5 months ago
- RabbitMash: an efficient highly optimized implementation of Mash.☆20Oct 28, 2023Updated 2 years ago
- Estimating gene family turnover rates by likelihood-based methods☆12Aug 17, 2020Updated 5 years ago
- A pipeline to identify gene family using mutiple tools and scripts.☆11Aug 22, 2021Updated 4 years ago
- phy-mer☆11Oct 12, 2017Updated 8 years ago
- A mosaic genome painting tool for plant genomes☆18Mar 4, 2025Updated last year
- Probabilistic single-individual haplotyping☆10Mar 15, 2019Updated 6 years ago
- Programs for performing various population genetic analyses☆11Dec 2, 2024Updated last year
- Hagfish - assess an assembly through creative use of coverage plots☆36Aug 9, 2012Updated 13 years ago
- ☆26Aug 10, 2021Updated 4 years ago
- Pipeline for structural variation detection in cohorts☆52Sep 14, 2021Updated 4 years ago
- Distinguishing among modes of convergent adaptation using population genomic data: statistical inference method, extensions, and examples☆13May 1, 2019Updated 6 years ago
- Scripts for analyses and figures for SNP STR Imputation manuscript☆14Jul 24, 2018Updated 7 years ago
- Decomposition Into Single-COpy gene trees (DISCO) is a method for decomposing multi-copy gene-family trees while attempting to preserve o…☆11Jun 19, 2025Updated 8 months ago
- convert a multi-sample VCF file to a multiple sequence alignment (C)☆15Feb 15, 2019Updated 7 years ago
- A procedure to find Fst outliers based on an inferred distribution of neutral Fst☆19Aug 26, 2019Updated 6 years ago
- WITCH is a multiple sequence alignment method that uses multiple weighted HMMs to align unaligned sequences and find consensuses.☆13Nov 18, 2025Updated 3 months ago
- Program for estimating admixture proportions and doing principal component analysis of a single NGS sample☆11Aug 15, 2024Updated last year
- use paired-end transcriptome reads to scaffold genomes☆11May 30, 2019Updated 6 years ago
- an ensemble usage of MAFFT-linsi --add on large datasets☆13May 31, 2024Updated last year
- ☆15Jun 2, 2021Updated 4 years ago
- A python tool to evaluate genomic prediction in complex scenarios☆37Oct 18, 2022Updated 3 years ago
- A tool set to assess the quality of the per read phasing and reduce the errors.☆13Jun 25, 2020Updated 5 years ago
- Method used in the study on germline mutation rate estimation in 68 species of vertebrates.☆16Oct 11, 2021Updated 4 years ago
- Visualizing gene tree conflict using Phyparts, and ETE3☆14Jun 17, 2023Updated 2 years ago
- Singularity port of HLA typing based on an input exome BAM file and is currently infers infers alleles for the three major MHC class I (…☆14Jan 15, 2017Updated 9 years ago
- This is the GitHub repository for our benchmarking study "Benchmarking of computational error-correction methods for next-generation sequ…☆12Mar 13, 2020Updated 5 years ago
- Set of script for the paper on the cattle graph genome☆13Jan 10, 2023Updated 3 years ago
- Determining tandem repeat lengths using raw nanopore signals.☆15Sep 11, 2023Updated 2 years ago