omys-omics / triangulaR
Calculate Hybrid Index and Heterozygosity from SNP data
☆10Updated last month
Alternatives and similar repositories for triangulaR:
Users that are interested in triangulaR are comparing it to the libraries listed below
- R package for analysis of hybrids and hybrid zones☆19Updated last year
- Detects Outliers and plots genomic clines from BGC output, and extends the plotting functionality of INTROGRESS to Correlate genomic clin…☆16Updated 3 months ago
- Sex assignment through coverage☆17Updated 10 months ago
- This repository contains the code and manual for the R package delimitR.☆17Updated 2 years ago
- Scripts for population genetics analysis☆19Updated 2 years ago
- K-mer based classifier for Y-contig identification from Whole Genome Assemblies☆11Updated 4 years ago
- ☆26Updated last year
- ☆15Updated 3 years ago
- An R function to compute Concordance Factors from SNP datasets☆13Updated last month
- Caculate the genetic distance of Dxy(like Fst) between the two populations form the vcf file .☆8Updated 6 years ago
- Package for species delimitation analysis☆10Updated last week
- ☆17Updated 6 years ago
- ☆38Updated last year
- Population assignment analysis using R☆17Updated 2 months ago
- Scripts to analyze data using TreeMix. This pipeline runs TreeMix with bootstrapping, helps choose number of migration events and creates…☆30Updated 10 months ago
- Scripts and resources for the haploblocks manuscript☆15Updated 4 years ago
- ☆11Updated 7 years ago
- A genome-wide IM blockwise likelihood estimation toolkit☆15Updated 6 months ago
- ABLE - Approximate Blockwise Likelihood Estimation☆17Updated 6 years ago
- Software for ancestry estimation in unrelated individuals☆15Updated this week
- ☆18Updated last year
- SambaR: Snp datA Management and Basic Analyses in R☆26Updated last week
- HybSeq Target Capture of 353 Protein Coding Genes in Any Angiosperm☆17Updated last year
- Visualizing gene tree conflict using Phyparts, and ETE3☆14Updated last year
- D Frequency Spectrum: Signatures of introgression across the allele frequency spectrum☆16Updated 4 years ago
- Collection of Python scripts for parsing/analyses of RAD-seq data☆22Updated 3 years ago
- Scripts for reformatting data. Mainly from tab separated to an esoteric program specific format☆12Updated 8 months ago
- Distinguishing among modes of convergent adaptation using population genomic data: statistical inference method, extensions, and examples☆13Updated 5 years ago
- Ancestry_HMM-S is program designed to infer adaptive introgression from population genomic data☆16Updated last year
- Quartet Sampling method for phylogenetic branch support evaluation☆16Updated 10 months ago