omys-omics / triangulaRLinks
Calculate Hybrid Index and Heterozygosity from SNP data
☆12Updated last month
Alternatives and similar repositories for triangulaR
Users that are interested in triangulaR are comparing it to the libraries listed below
Sorting:
- R package for analysis of hybrids and hybrid zones☆21Updated last year
- Sex assignment through coverage☆20Updated 4 months ago
- This repository contains the code and manual for the R package delimitR.☆17Updated 3 years ago
- Deleterious mutation prediction pipeline☆13Updated 9 months ago
- An R function to compute Concordance Factors from SNP datasets☆14Updated 10 months ago
- ☆16Updated 3 years ago
- Detects Outliers and plots genomic clines from BGC output, and extends the plotting functionality of INTROGRESS to Correlate genomic clin…☆16Updated 11 months ago
- Software package for estimating fine-scale recombination rate.☆16Updated 4 years ago
- Script for removing or counting invariant sites for the RAxML ascertainment bias corrections☆16Updated 11 months ago
- ☆42Updated 2 years ago
- K-mer based classifier for Y-contig identification from Whole Genome Assemblies☆13Updated 5 years ago
- An efficient tool for cross-population fixation index estimation on variant call format files☆10Updated last year
- Package for species delimitation analysis☆11Updated 9 months ago
- Instruction and scripts for reconstructing ancestral genome from pairwise syntenic blocks using MLGO☆13Updated 6 years ago
- Scripts to analyze data using TreeMix. This pipeline runs TreeMix with bootstrapping, helps choose number of migration events and creates…☆37Updated last year
- ABLE - Approximate Blockwise Likelihood Estimation☆17Updated 7 years ago
- A genome-wide IM blockwise likelihood estimation toolkit☆17Updated last year
- G-PhoCS is a software package for inferring ancestral population sizes, population divergence times, and migration rates from individual …☆34Updated 4 years ago
- Scripts for population genetics analysis☆20Updated 2 years ago
- Assessing confidence in introgression among four populations☆27Updated 4 years ago
- loco-pipe is an automated Snakemake pipeline that streamlines a set of essential population genomic analyses for low-coverage whole genom…☆20Updated 4 months ago
- Genome-wide de novo genotyping with 2bRAD☆23Updated 4 months ago
- D Frequency Spectrum: Signatures of introgression across the allele frequency spectrum☆18Updated 5 years ago
- mtGrasp: de novo reference-grade mitochondrial genome assembly and standardization☆20Updated 7 months ago
- Quantifying Introgression via Branch Lengths☆54Updated 3 years ago
- reference-free estimation of ploidy level from whole genome sequencing data based on de Bruijn graph☆17Updated 2 years ago
- Analyze and simulate Pool-Seq time series data☆16Updated 3 years ago
- ☆18Updated 2 years ago
- Topology weighting from unphased genotypes of any ploidy☆15Updated 2 months ago
- Leroy & Rougemont - “learning-by-doing” introduction to population genomics - scripts☆21Updated 6 years ago