QuentinRougemont / treemix_workflowLinks
☆11Updated 4 years ago
Alternatives and similar repositories for treemix_workflow
Users that are interested in treemix_workflow are comparing it to the libraries listed below
Sorting:
- K-mer based classifier for Y-contig identification from Whole Genome Assemblies☆12Updated 5 years ago
- SNP/Genotype calling based on ANGSD && downstream analyses☆9Updated 10 years ago
- Deleterious mutation prediction pipeline☆13Updated 7 months ago
- Calculate Hybrid Index and Heterozygosity from SNP data☆10Updated 3 months ago
- Caculate the genetic distance of Dxy(like Fst) between the two populations form the vcf file .☆8Updated 6 years ago
- Software package for estimating fine-scale recombination rate.☆16Updated 4 years ago
- Reconstruction of ancestral genome maps☆16Updated 7 years ago
- ☆12Updated 5 years ago
- ☆12Updated last month
- Using de-novo assembly and read-phasing to assemble reference-free diploid genomes☆22Updated last month
- Instruction and scripts for reconstructing ancestral genome from pairwise syntenic blocks using MLGO☆13Updated 6 years ago
- Sex assignment through coverage☆19Updated 2 months ago
- Ancestral flowering plant genomes reconstruction☆13Updated 2 years ago
- Cyclic DNA Sequence Aligner☆10Updated 5 years ago
- Dynamic Elongation of a Genome Assembly Path☆21Updated last year
- ☆21Updated 2 years ago
- GERP++ code from Sidow Lab modified by Kevin Thornton to compile properly.☆21Updated 8 years ago
- SYNPHONI is a tool designed for reconstructing the dynamic evolution of syntenic relationships across all scales of phylogenetic distance…☆11Updated 2 years ago
- a tool to identify species and inter-species hybrids and chromosome copy number variants from short-read data☆19Updated 5 years ago
- Toolkit for evolutionary analyses of linkage groups☆32Updated last year
- Scripts used to perform analyses in Rice et al. (2023)☆15Updated last year
- convert a multi-sample VCF file to a multiple sequence alignment (C)☆14Updated 6 years ago
- Diploid genome assembly analysis tools☆14Updated 10 months ago
- ☆24Updated last year
- reference-free estimation of ploidy level from whole genome sequencing data based on de Bruijn graph☆17Updated 2 years ago
- WinPCA. A package for windowed principal component analysis.☆30Updated 3 weeks ago
- Cost-efficient genome-wide gene expression profiling☆16Updated 2 years ago
- G-PhoCS is a software package for inferring ancestral population sizes, population divergence times, and migration rates from individual …☆34Updated 4 years ago
- ☆16Updated 2 years ago
- Decomposition Into Single-COpy gene trees (DISCO) is a method for decomposing multi-copy gene-family trees while attempting to preserve o…☆10Updated last month