researchapps / polysolverLinks
Singularity port of HLA typing based on an input exome BAM file and is currently infers infers alleles for the three major MHC class I (HLA-A, -B, -C)
☆13Updated 8 years ago
Alternatives and similar repositories for polysolver
Users that are interested in polysolver are comparing it to the libraries listed below
Sorting:
- Repo that aids in the detection of microsatellite instabilities (MSI) from sequencing data☆20Updated last year
- A tool kit for dissecting cancer evolution from multi-region derived tumor biopsies via somatic mutations☆36Updated 3 years ago
- Filter and prioritize fusion calls☆20Updated 9 months ago
- MSKCC Reis-Filho Lab pipeline thingy☆17Updated last month
- DriverPower☆26Updated 5 months ago
- Texomer: Integrating Analysis of Cancer Genome and Transcriptome Sequencing Data☆21Updated 4 years ago
- CNAqc - Copy Number Alteration (CNA) Quality Check package☆22Updated last month
- mitochondrial variant analysis tools☆14Updated 4 years ago
- Fork of https://bitbucket.org/mcgranahanlab/lohhla☆17Updated 5 years ago
- Workflow for Sequenza, cellularity and ploidy☆19Updated last month
- Codes and Data for FFPEsig manuscript☆17Updated last year
- A set of tools to annotate VCF files with expression and readcount data☆29Updated 4 months ago
- knowledge-based genotyping of cancer hotspots from the tumor BAM files☆21Updated 3 years ago
- Advanced plotting functions for CNV data generated by CNV-Seq and Control Freec☆13Updated 4 years ago
- Model-based subclonal deconvolution from bulk sequencing.☆33Updated 6 months ago
- ☆22Updated 5 months ago
- Abismal is a mapper of FASTQ bisulfite-converted short reads (between 50 and 1000 bases) to a FASTA reference genome.☆18Updated last week
- Fork from https://bitbucket.org/mcgranahanlab/lohhla/src, modified for MSKCC needs☆31Updated last year
- ☆17Updated 11 months ago
- All-FIT - Allele-Frequency-based Imputation of Tumor Purity☆17Updated 5 years ago
- ☆18Updated 3 years ago
- Multi-sample cancer phylogeny reconstruction☆35Updated 7 years ago
- ☆11Updated 2 years ago
- Filters for false-positive mutation calls in NGS☆30Updated 6 years ago
- SigProfilerTopography allows evaluating the effect of chromatin organization, histone modifications, transcription factor binding, DNA re…☆20Updated 4 months ago
- Main repository for Drews et al. (Nature, 2022)☆42Updated last year
- ☆15Updated last year
- The R package "sarlacc" contains a pipeline to analyse nanopore sequencing data. It trims adapter sequences, retrieves optional UMI's, cl…☆13Updated 6 years ago
- Integrative analysis of complex structural variants☆22Updated 4 years ago
- This is a read-only mirror of the CRAN R package repository. sequenza — Copy Number Estimation from Tumor Genome Sequencing Data. Homep…☆20Updated 6 years ago