researchapps / polysolver
Singularity port of HLA typing based on an input exome BAM file and is currently infers infers alleles for the three major MHC class I (HLA-A, -B, -C)
☆13Updated 8 years ago
Alternatives and similar repositories for polysolver:
Users that are interested in polysolver are comparing it to the libraries listed below
- Combined mutation recurrence and functional impact to identify coding and non-coding cancer drivers☆15Updated 6 years ago
- Filter and prioritize fusion calls☆20Updated 6 months ago
- knowledge-based genotyping of cancer hotspots from the tumor BAM files☆21Updated 3 years ago
- A set of tools to annotate VCF files with expression and readcount data☆29Updated 3 weeks ago
- ☆17Updated 8 months ago
- CNAqc - Copy Number Alteration (CNA) Quality Check package☆20Updated 3 weeks ago
- R package to calculate the Aneuploidy Score from Chromosome Arm-level SCNAs/Aneuploidies (CAAs) as outlined and expanded by Shukla et al.…☆16Updated 4 years ago
- Advanced plotting functions for CNV data generated by CNV-Seq and Control Freec☆13Updated 4 years ago
- DRAGEN Tumor/Normal workflow post-processing☆22Updated last year
- This repository contains the code to run the ASCETS arm-level copy number events caller for targeted sequencing data. ASCETS produces arm…☆16Updated last year
- ☆15Updated last year
- Workflow for Sequenza, cellularity and ploidy☆18Updated last week
- Pipeline to call neoantigens from intron retention events derived from RNA-Seq data.☆28Updated 4 years ago
- A tool kit for dissecting cancer evolution from multi-region derived tumor biopsies via somatic mutations☆36Updated 3 years ago
- Python function for TMB snake plots☆16Updated 4 years ago
- CNV analysis workflow code for the manuscript☆13Updated 4 years ago
- Filters for false-positive mutation calls in NGS☆30Updated 5 years ago
- ☆11Updated last year
- Paired Replicate Analysis of Allelic Differential Splicing Events☆11Updated 2 years ago
- mitochondrial variant analysis tools☆14Updated 4 years ago
- Fork of https://bitbucket.org/mcgranahanlab/lohhla☆17Updated 5 years ago
- A flexible framework to annotate and prioritize cancer somatic mutations.☆8Updated 7 years ago
- novoBreak: local assembly for breakpoint detection in cancer genomes☆26Updated 6 years ago
- DriverPower☆26Updated 2 months ago
- R package specialized in HLA typing clustering and visualization based on specific similarity metrics☆12Updated 5 years ago
- Flexible Bayesian inference of mutational signatures☆34Updated 2 years ago
- Main repository for Drews et al. (Nature, 2022)☆39Updated last year
- cDriver R package for finding candidate driver genes in cancers☆18Updated 7 years ago
- software for analysis of chromatin feature occupancy profiles from high-throughput sequencing data☆17Updated 5 years ago
- R package for visualizing complex and multi-track 1D and 2D genomic data in GenomicRanges framework☆16Updated 2 months ago