Singularity port of HLA typing based on an input exome BAM file and is currently infers infers alleles for the three major MHC class I (HLA-A, -B, -C)
☆14Jan 15, 2017Updated 9 years ago
Alternatives and similar repositories for polysolver
Users that are interested in polysolver are comparing it to the libraries listed below
Sorting:
- NOTE: This package has been renamed to sparrow and will be submitted to Bioconductor 3.14. Please use that package instead. This is kept …☆22Nov 16, 2020Updated 5 years ago
- ⛏ HLA predictions from NGS shotgun data☆55Jun 6, 2025Updated 9 months ago
- CALDER (Cancer Analysis of Longitudinal Data through Evolutionary Reconstruction) reconstructs evolutionary trees from longitudinal bulk …☆15Nov 28, 2023Updated 2 years ago
- Pipeline to detect HLA disruption from WES and RNAseq data☆22Feb 17, 2025Updated last year
- Fork of the Polysolver project☆33Nov 21, 2019Updated 6 years ago
- GLASS consortium☆14May 31, 2022Updated 3 years ago
- R package – HLA Genotype Imputation with Attribute Bagging (development version only)☆31May 24, 2025Updated 9 months ago
- Detects human contamination in bam files☆16Sep 10, 2020Updated 5 years ago
- Pipeline for RNA and DNA integrated analysis for somatic mutation detection☆14Feb 17, 2026Updated last month
- ☆69Jun 21, 2022Updated 3 years ago
- A series of tools and pipelines for genotyping MHC / HLA genes and alleles using SMRT Sequencing☆22Aug 29, 2016Updated 9 years ago
- Tool for Motif Deconvolution in large HLA-II ligand datasets without the need of prior alignment.☆15Feb 17, 2025Updated last year
- A false-positive filter for variants called from massively parallel sequencing☆29May 30, 2017Updated 8 years ago
- ABSOLUTE source code that works with allelic copy ratio on both hg19 and hg38☆13Nov 5, 2025Updated 4 months ago
- code for data processing and visualisation associated with the stromal subclasses manuscript☆13Oct 30, 2020Updated 5 years ago
- QBRC Neoantigen calling pipeline with CSiN calculation embedded☆26Feb 8, 2022Updated 4 years ago
- HLA typing for Sanger Based Test☆19Apr 7, 2023Updated 2 years ago
- SigProfilerTopography allows evaluating the effect of chromatin organization, histone modifications, transcription factor binding, DNA re…☆24Feb 27, 2026Updated 3 weeks ago
- R package implementing a simple method for CD8 T cell epitope prediction by MHC class I binding for HLA and other MHC-I molecules.☆15Sep 21, 2020Updated 5 years ago
- Testing a neutral evolution model on cancer sequencing data☆10Feb 17, 2021Updated 5 years ago
- Clonal structure identification through penalizing pairwise differences☆11Nov 25, 2025Updated 3 months ago
- Kourami: Graph-guided assembly for HLA alleles☆39May 21, 2019Updated 6 years ago
- Accurate Typing of Human Leukocyte Antigen (HLA) by Oxford Nanopore Sequencing☆17Jan 19, 2018Updated 8 years ago
- ☆48Jul 7, 2022Updated 3 years ago
- Easy Copy Number !☆21Aug 27, 2025Updated 6 months ago
- ☆26Dec 4, 2019Updated 6 years ago
- Unified access to several second-generation deconvolution methods☆95Jan 5, 2026Updated 2 months ago
- xHLA: Fast and accurate HLA typing from short read sequence data☆113Oct 13, 2023Updated 2 years ago
- R package specialized in HLA typing clustering and visualization based on specific similarity metrics☆14Nov 21, 2019Updated 6 years ago
- Code accompanying Characterizing genetic intra-tumor heterogeneity across 2,658 human cancer genomes☆44Apr 16, 2021Updated 4 years ago
- Fork from https://bitbucket.org/mcgranahanlab/lohhla/src, modified for MSKCC needs☆32Jul 27, 2023Updated 2 years ago
- Tumour stratification by maximum-likelihood repeated evolution from multi-region sequencing data☆67Dec 25, 2022Updated 3 years ago
- ☆11May 26, 2023Updated 2 years ago
- ☆12Jan 8, 2026Updated 2 months ago
- Code accompanying The Evolutionary history of 2,658 cancers☆47Apr 16, 2021Updated 4 years ago
- Package to design primers for MutaSeq and related methods☆11Jan 15, 2021Updated 5 years ago
- CNApp represents the first web tool to perform a comprehensive and integrative analysis of copy number alterations (CNAs) in a user-frien…☆20Jan 17, 2020Updated 6 years ago
- Fork of https://bitbucket.org/mcgranahanlab/lohhla☆18Feb 19, 2020Updated 6 years ago
- NeoFlow: a proteogenomics pipeline for neoantigen discovery☆28Nov 16, 2024Updated last year