researchapps / polysolverLinks
Singularity port of HLA typing based on an input exome BAM file and is currently infers infers alleles for the three major MHC class I (HLA-A, -B, -C)
☆14Updated 8 years ago
Alternatives and similar repositories for polysolver
Users that are interested in polysolver are comparing it to the libraries listed below
Sorting:
- Repo that aids in the detection of microsatellite instabilities (MSI) from sequencing data☆20Updated last year
- knowledge-based genotyping of cancer hotspots from the tumor BAM files☆21Updated 4 years ago
- Combined mutation recurrence and functional impact to identify coding and non-coding cancer drivers☆15Updated 7 years ago
- This repository contains the code to run the ASCETS arm-level copy number events caller for targeted sequencing data. ASCETS produces arm…☆18Updated last year
- Codes and Data for FFPEsig manuscript☆17Updated last year
- Clonal and subclonal Copy Number Alteration quality check integrating somatic mutation☆24Updated 2 months ago
- A set of tools to annotate VCF files with expression and readcount data☆29Updated 9 months ago
- A tool kit for dissecting cancer evolution from multi-region derived tumor biopsies via somatic mutations☆35Updated 3 years ago
- mitochondrial variant analysis tools☆15Updated 4 years ago
- Pipeline to call neoantigens from intron retention events derived from RNA-Seq data.☆28Updated 4 years ago
- Advanced plotting functions for CNV data generated by CNV-Seq and Control Freec☆13Updated 5 years ago
- Model-based tumour subclonal deconvolution using population genetics☆33Updated 3 weeks ago
- Algorithm for detecting alternative splicing in a population of single cells. See details in Welch et al., Nucleic Acids Research 2016: h…☆23Updated 9 years ago
- Abismal is a mapper of FASTQ bisulfite-converted short reads (between 50 and 1000 bases) to a FASTA reference genome.☆20Updated last week
- ☆17Updated last year
- DriverPower☆26Updated 11 months ago
- Texomer: Integrating Analysis of Cancer Genome and Transcriptome Sequencing Data☆21Updated 5 years ago
- Flexible Bayesian inference of mutational signatures☆38Updated 2 years ago
- Fork of https://bitbucket.org/mcgranahanlab/lohhla☆18Updated 5 years ago
- MSKCC Reis-Filho Lab pipeline thingy☆18Updated 3 months ago
- A collection of modules to process and analyze IMGT-HLA sequences.☆28Updated 3 years ago
- Filter and prioritize fusion calls☆20Updated last year
- ☆11Updated 2 years ago
- Python function for TMB snake plots☆16Updated 5 years ago
- The R package "sarlacc" contains a pipeline to analyse nanopore sequencing data. It trims adapter sequences, retrieves optional UMI's, cl…☆15Updated 6 years ago
- Main repository for Drews et al. (Nature, 2022)☆42Updated 2 years ago
- Pairtree is a method for reconstructing cancer evolutionary history in individual patients, and analyzing intratumor genetic heterogeneit…☆41Updated last year
- ☆14Updated 6 months ago
- R package to calculate the Aneuploidy Score from Chromosome Arm-level SCNAs/Aneuploidies (CAAs) as outlined and expanded by Shukla et al.…☆16Updated 4 years ago
- Fork from https://bitbucket.org/mcgranahanlab/lohhla/src, modified for MSKCC needs☆32Updated 2 years ago