Alternatives and similar repositories for gwaslab:

Users that are interested in gwaslab are comparing it to the libraries listed below

• Cloufield / GWASTutorial
  GWAS Tutorial for Beginners
  ☆249Updated 3 months ago
• chr1swallace / coloc
  Repo for the R package coloc
  ☆164Updated 2 weeks ago
• weizhouUMICH / SAIGE
  ☆193Updated 2 years ago
• broadinstitute / tensorqtl
  Ultrafast GPU-enabled QTL mapper
  ☆175Updated last month
• hakyimlab / MetaXcan
  MetaXcan software and manuscript
  ☆159Updated 2 weeks ago
• omerwe / polyfun
  PolyFun (POLYgenic FUNctionally-informed fine-mapping)
  ☆106Updated 4 months ago
• broadinstitute / gtex-pipeline
  GTEx & TOPMed data production and analysis pipelines
  ☆360Updated 2 months ago
• nloyfer / wgbs_tools
  tools for working with Bisulfite Sequencing data while preserving reads intrinsic dependencies
  ☆151Updated last week
• statgen / pheweb
  A tool to build a website to browse hundreds or thousands of GWAS.
  ☆172Updated 8 months ago
• getian107 / PRScsx
  Cross-population polygenic prediction
  ☆79Updated 4 months ago
• gusevlab / fusion_twas
  methods for functional summary-based imputation
  ☆81Updated 2 years ago
• pjgreer / ukb-rap-tools
  Scripts and workflows for use analyzing UK Biobank data from the DNANexus Research Analysis Platform
  ☆57Updated last year
• getian107 / PRScs
  Polygenic prediction via continuous shrinkage priors
  ☆170Updated 4 months ago
• loosolab / TOBIAS
  Transcription factor Occupancy prediction By Investigation of ATAC-seq Signal
  ☆210Updated 2 months ago
• Boyle-Lab / Blacklist
  Application for making ENCODE Blacklists
  ☆296Updated 3 years ago
• ENCODE-DCC / rna-seq-pipeline
  ☆148Updated 2 years ago
• zhangyuqing / ComBat-seq
  Batch effect adjustment based on negative binomial regression for RNA sequencing count data
  ☆176Updated 4 years ago
• hbctraining / Intro-to-rnaseq-hpc-O2
  This repository has teaching materials for a 2 and 3-day Introduction to RNA-sequencing data analysis workshop using the O2 Cluster
  ☆167Updated 4 years ago
• freeseek / score
  Tools to work with GWAS-VCF summary statistics files
  ☆118Updated 6 months ago
• CebolaLab / RNA-seq
  Step-by-step analysis pipeline for RNA-seq data
  ☆108Updated last year
• rgcgithub / regenie
  regenie is a C++ program for whole genome regression modelling of large genome-wide association studies.
  ☆208Updated 2 months ago
• zhenin / HDL
  High-definition likelihood inference of genetic correlations (HDL)
  ☆109Updated this week
• JonJala / mtag
  Python command line tool for Multi-Trait Analysis of GWAS (MTAG)
  ☆182Updated last year
• snakemake-workflows / rna-seq-star-deseq2
  RNA-seq workflow using STAR and DESeq2
  ☆338Updated 8 months ago
• NBISweden / workshop-scRNAseq
  Single cell RNA sequencing analysis course
  ☆208Updated this week
• freeseek / gtc2vcf
  Tools to convert Illumina IDAT/BPM/EGT/GTC and Affymetrix CEL/CHP files to VCF
  ☆149Updated 2 months ago
• BioOmics / iSeq
  Download sequencing data and metadata from GSA, SRA, ENA, and DDBJ databases.
  ☆184Updated last week
• hbctraining / Intro-to-ChIPseq
  Intro to ChIPseq using HPC
  ☆302Updated 2 years ago
• broadinstitute / ABC-Enhancer-Gene-Prediction
  Cell type specific enhancer-gene predictions using ABC model (Fulco, Nasser et al, Nature Genetics 2019)
  ☆219Updated last week
• navinlabcode / copykat
  ☆228Updated 9 months ago