Cloufield / gwaslab
A Python package for handling and visualizing GWAS summary statistics. https://cloufield.github.io/gwaslab/
☆179Updated this week
Alternatives and similar repositories for gwaslab:
Users that are interested in gwaslab are comparing it to the libraries listed below
- GWAS Tutorial for Beginners☆226Updated last month
- ☆193Updated 2 years ago
- Cross-population polygenic prediction☆77Updated 2 months ago
- Ultrafast GPU-enabled QTL mapper☆169Updated 2 weeks ago
- Repo for the R package coloc☆160Updated 3 months ago
- GTEx & TOPMed data production and analysis pipelines☆357Updated 3 weeks ago
- Batch effect adjustment based on negative binomial regression for RNA sequencing count data☆171Updated 4 years ago
- A tool to build a website to browse hundreds or thousands of GWAS.☆168Updated 6 months ago
- Application for making ENCODE Blacklists☆288Updated 3 years ago
- MetaXcan software and manuscript☆155Updated 3 months ago
- A Systematic and Dynamic Pipeline for Single-Cell RNA Sequencing Analysis☆106Updated last year
- WGBS/NOMe-seq Data Processing & Differential Methylation Analysis☆138Updated last year
- regenie is a C++ program for whole genome regression modelling of large genome-wide association studies.☆202Updated 3 weeks ago
- PolyFun (POLYgenic FUNctionally-informed fine-mapping)☆102Updated 2 months ago
- Scripts and workflows for use analyzing UK Biobank data from the DNANexus Research Analysis Platform☆51Updated last year
- Introduction to bulk RNA-seq☆102Updated last week
- ☆146Updated 2 years ago
- Linking GWAS data to analytical tools in R☆131Updated 2 years ago
- methods for functional summary-based imputation☆78Updated 2 years ago
- A step by step guide on how to use eMAGMA, an approach to conducting eQTL informed gene-based tests.☆63Updated 4 years ago
- PrediXcan Project☆109Updated 2 years ago
- A software package for calculating, applying, evaluating and plotting the results of polygenic risk scores☆191Updated 6 months ago
- A collection of scripts and notes related to genomics and bioinformatics☆204Updated last week
- Rapid standardisation and quality control of GWAS or QTL summary statistics☆78Updated 2 months ago
- Transcription factor Occupancy prediction By Investigation of ATAC-seq Signal☆208Updated 3 weeks ago
- ☆126Updated 6 years ago
- Cell types enrichment analysis☆191Updated 8 months ago
- This repository has teaching materials for a 2 and 3-day Introduction to RNA-sequencing data analysis workshop using the O2 Cluster☆166Updated 3 years ago
- Intro to ChIPseq using HPC☆294Updated 2 years ago
- Molecular QTL analysis protocol developed by ADSP Functional Genomics Consortium☆43Updated this week