Alternatives and similar repositories for locuscomparer

Users that are interested in locuscomparer are comparing it to the libraries listed below

• RitchieLab / eQTpLot
  Visualization of Colocalization Between eQTL and GWAS Data
  ☆84Updated 3 years ago
• chr1swallace / coloc
  Repo for the R package coloc
  ☆166Updated last month
• gusevlab / fusion_twas
  methods for functional summary-based imputation
  ☆85Updated 3 years ago
• zhenin / HDL
  High-definition likelihood inference of genetic correlations (HDL)
  ☆114Updated last month
• Al-Murphy / MungeSumstats
  Rapid standardisation and quality control of GWAS or QTL summary statistics
  ☆81Updated last month
• cran / MendelianRandomization
   This is a read-only mirror of the CRAN R package repository. MendelianRandomization — Mendelian Randomization Package
  ☆45Updated last year
• neurogenomics / MAGMA_Celltyping
  Find causal cell-types underlying complex trait genetics
  ☆85Updated 3 months ago
• variani / finemapr
  Fine-mapping pipeline in R: FINEMAP, CAVIAR, PAINTOR, GCTA-COJO, ABF
  ☆31Updated last year
• MRCIEU / gwasvcf
  Reading, querying and writing GWAS summary data in VCF format
  ☆80Updated last year
• clagiamba / moloc
  ☆35Updated 4 years ago
• mikegloudemans / gwas-download
  Easily download publicly available GWAS summary statistics.
  ☆76Updated last year
• MRCIEU / gwasglue
  Linking GWAS data to analytical tools in R
  ☆137Updated 3 years ago
• atgu / ukbb_pan_ancestry
  Analyses conducting GWAS across the UKBB diverse superpopulations
  ☆50Updated 3 weeks ago
• rondolab / MR-PRESSO
  Performs the Mendelian Randomization Pleiotropy RESidual Sum and Outlier (MR-PRESSO) method.
  ☆90Updated last year
• totajuliusd / topr
  topr is a collection of plotting functions for visualizing and exploring genetic association results. Association results from multiple p…
  ☆63Updated 7 months ago
• MRCIEU / ieugwasr
  R interface to the IEU GWAS database API
  ☆95Updated last month
• jrs95 / hyprcoloc
  Hypothesis Prioritisation in multi-trait Colocalization
  ☆53Updated last year
• omerwe / polyfun
  PolyFun (POLYgenic FUNctionally-informed fine-mapping)
  ☆116Updated 5 months ago
• dingruofan / xQTLbiolinks
  xQTLbiolinks: a comprehensive and scalable tool for integrative analysis of molecular QTLs
  ☆34Updated 3 months ago
• xqwen / fastenloc
  Colocalization analysis of genetic association signals
  ☆53Updated 3 weeks ago
• CBIIT / LDlinkR
  LDlinkR
  ☆59Updated last year
• studentyaoshi / MR
  ☆22Updated 2 years ago
• cnfoley / hyprcoloc
  R package for performing high dimensional multi-trait colocalization analyses using GWAS summary data
  ☆50Updated 4 years ago
• Annefeng / PBK-QC-pipeline
  Partners Biobank genomics data QC
  ☆26Updated 5 years ago
• gamazonlab / MR-JTI
  ☆56Updated 4 months ago
• ramiromagno / gwasrapidd
  gwasrapidd: an R package to query, download and wrangle GWAS Catalog data
  ☆96Updated last week
• PoisonAlien / TCGAmutations
  R data package for pre-compiled somatic mutations from TCGA cohorts and CCLE
  ☆93Updated 8 months ago
• statgen / METAL
  Meta-analysis of genomewide association scans
  ☆55Updated 10 months ago
• opentargets / genetics-sumstat-harmoniser
  Harmonise GWAS summary statistics against a reference VCF
  ☆41Updated 3 years ago
• francois-a / fastqtl
  Enhanced version of the FastQTL QTL mapper
  ☆65Updated 2 years ago