StatFunGen / pecotmrLinks
Post-GWAS enrichment, colocalization, TWAS and Mendelian Randomization to integrate molecular QTL and GWAS.
☆27Updated last week
Alternatives and similar repositories for pecotmr
Users that are interested in pecotmr are comparing it to the libraries listed below
Sorting:
- GENI plots to visualise results from genome-wide association studies☆29Updated 9 months ago
- Estimate local SNP heritability and genetic covariance from GWAS summary association statistics.☆41Updated 7 years ago
- MA-FOCUS: Multi-Ancestry Fine-mapping Of CaUsal gene Sets☆34Updated last year
- ☆17Updated 8 months ago
- Regional association plots☆25Updated last year
- A collection of various utilities for GWAS summary statistics☆29Updated last year
- R package for investigating clustered heterogeneity in Mendelian randomization (MR) analyses.☆17Updated 3 years ago
- xQTLbiolinks: a comprehensive and scalable tool for integrative analysis of molecular QTLs☆37Updated 5 months ago
- This software tool implements the OPERA (omics pleiotropic association) method to test for combinatorial pleiotropic associations of mole…☆36Updated 10 months ago
- FLAMES: Accurate gene prioritization in GWAS loci☆41Updated 5 months ago
- Create Regional Association Plots☆12Updated last year
- An R package for creating ggplot2 based miami plots.☆17Updated 5 months ago
- A statistical test of pleiotropic effect of a genetic variant on two traits using GWAS summary statistics☆34Updated last month
- ☆35Updated 4 years ago
- Code repository for Pietzner M, Wheeler E, et al. 2021 "Mapping the proteo-genomic convergence of human diseases"☆24Updated 3 years ago
- Code supporting analyses in paper on fine-mapping AD loci☆16Updated 4 years ago
- Colocalization analysis of genetic association signals☆52Updated last month
- Integration of TWAS and Colocalization Analysis☆17Updated 9 months ago
- Tissue-Gene Fine-Mapping☆21Updated 4 months ago
- ☆11Updated 3 years ago
- ☆19Updated last year
- MR-link-2: pleiotropy robust cis MR☆18Updated 3 months ago
- GWAS for survival analysis in large cohorts☆21Updated last year
- ☆57Updated 6 months ago
- R script to make Manhattan-style plot for TWAS☆38Updated 3 years ago
- Automated statistical and functional fine-mapping pipeline with extensive API access to datasets.☆38Updated 2 years ago
- Regional association plots☆26Updated last year
- harmonization, liftover, and imputation of summary statistics from GWAS☆33Updated 4 years ago
- corrplot of LDSC genetic correlation results☆52Updated 3 years ago
- PUMICE: Prediction Using Models Informed by Chromatin conformations and Epigenomics☆12Updated last year