Alternatives and similar repositories for integrative

Users that are interested in integrative are comparing it to the libraries listed below

• xqwen / dap
  software package for integrative genetic association analysis
  ☆34Updated last year
• xqwen / fastenloc
  Colocalization analysis of genetic association signals
  ☆53Updated 3 weeks ago
• bogdanlab / focus
  FOCUS: Fine-mapping Of CaUsal gene Sets
  ☆45Updated last year
• gkichaev / PAINTOR_V3.0
  Fast, integrative fine mapping with functional data
  ☆58Updated 5 years ago
• thewonlab / H-MAGMA
  ☆32Updated last year
• gabraham / plink2R
  Read PLINK BED/BIM/FAM files into R
  ☆41Updated 3 years ago
• clagiamba / moloc
  ☆35Updated 4 years ago
• eQTL-Catalogue / eQTL-Catalogue-resources
  ☆47Updated 2 weeks ago
• izhbannikov / haploR
  haploR: utilities for mining Haploreg and other similar web-based tools
  ☆9Updated last year
• Kyoko-wtnb / FUMA_scRNA_data
  Descriptions/scripts for pre-process and processed data for FUMA cell specificity analyses (scRNA-seq)
  ☆23Updated 5 years ago
• hakyimlab / summary-gwas-imputation
  harmonization, liftover, and imputation of summary statistics from GWAS
  ☆32Updated 4 years ago
• RebeccaFine / benchmarker
  Benchmarking gene and variant prioritization algorithms for GWAS data
  ☆15Updated 5 years ago
• dcalderon / rolypoly
  Method for identifying trait-relevant gene annotations from GWAS summary statistics.
  ☆18Updated 2 years ago
• xinhe-lab / ctwas
  causal TWAS (cTWAS)
  ☆43Updated last week
• xqwen / torus
  QTL Discovery using Annotations
  ☆25Updated 2 years ago
• huwenboshi / hess
  Estimate local SNP heritability and genetic covariance from GWAS summary association statistics.
  ☆42Updated 7 years ago
• brielin / Popcorn
  Software for estimating correlation of trait effect sizes across populations
  ☆46Updated last week
• douglasyao / mesc
  Mediated Expression Score Regression (MESC)
  ☆26Updated 2 years ago
• slowkow / proxysnps
  Get SNP proxies from the 1000 Genomes Project.
  ☆28Updated 6 years ago
• slowkow / snpsea
  Identify cell types and pathways affected by genetic risk loci.
  ☆37Updated last year
• opentargets / genetics-sumstat-harmoniser
  Harmonise GWAS summary statistics against a reference VCF
  ☆41Updated 3 years ago
• jxzb1988 / MMQTL
  MMQTL is a statistical package applying meta-analysis to detect multiple QTL signals integrating signals among conditions, with control f…
  ☆11Updated 2 months ago
• joepickrell / fgwas
  Functional genomics and genome-wide association studies
  ☆67Updated 6 years ago
• boxiangliu / locuscompare
  LocusCompare is an interactive visualization tool for comparing two genetic association datasets.
  ☆21Updated 2 years ago
• xtonyjiang / GNOVA
  A principled framework to estimate annotation-stratified genetic covariance using GWAS summary statistics.
  ☆29Updated last year
• francois-a / fastqtl
  Enhanced version of the FastQTL QTL mapper
  ☆65Updated 2 years ago
• carlaml / LDpred-funct
  Here we develop the software for the method LDpredfunct described in https://www.biorxiv.org/content/early/2018/07/24/375337
  ☆17Updated 9 months ago
• getian107 / SuSiEx
  Cross-population fine-mapping
  ☆36Updated 5 months ago
• ajaynadig / bhr
  Suite of heritability and genetic correlation estimation tools for exome-sequencing data
  ☆33Updated 3 months ago
• opentargets / genetics-finemapping
  Fine-mapping pipeline for Open Targets Genetics
  ☆26Updated 2 years ago