Alternatives and similar repositories for integrative

Users that are interested in integrative are comparing it to the libraries listed below

• bhattacharya-a-bt / MOSTWAS

  View on GitHub
  Multi-Omic Strategies for TWAS
  ☆13Mar 27, 2023Updated 2 years ago
• juliedwhite / miamiplot

  View on GitHub
  An R package for creating ggplot2 based miami plots.
  ☆18Mar 7, 2025Updated 11 months ago
• fhormoz / caviar

  View on GitHub
  ☆63Dec 30, 2021Updated 4 years ago
• xqwen / fastenloc

  View on GitHub
  Colocalization analysis of genetic association signals
  ☆53Jun 13, 2025Updated 8 months ago
• Stahl-Lab-MSSM / coloc2

  View on GitHub
  Upgrade to coloc
  ☆13Aug 1, 2018Updated 7 years ago
• hakyimlab / phenomexcan

  View on GitHub
  PhenomeXcan: mapping the genome to the phenome through the transcriptome
  ☆11Jun 28, 2020Updated 5 years ago
• davidaknowles / eagle

  View on GitHub
  An R package for detecting Gene-by-Environment (GxE) interaction effects on the transcriptome using Allele Specific Expression quantified…
  ☆22Oct 27, 2021Updated 4 years ago
• xqwen / dap

  View on GitHub
  software package for integrative genetic association analysis
  ☆35Jul 8, 2023Updated 2 years ago
• boxiangliu / locuscompare

  View on GitHub
  LocusCompare is an interactive visualization tool for comparing two genetic association datasets.
  ☆20Apr 8, 2023Updated 2 years ago
• jinghuazhao / R

  View on GitHub
  R packages
  ☆13Updated this week
• RajLabMSSM / catalogueR

  View on GitHub
  Easy-to-use R wrappers for the eQTL Catalogue's API (both with tabix and the REST API).
  ☆14Dec 23, 2022Updated 3 years ago
• jrs95 / hyprcoloc

  View on GitHub
  Hypothesis Prioritisation in multi-trait Colocalization
  ☆55Apr 8, 2024Updated last year
• francois-a / fastqtl

  View on GitHub
  Enhanced version of the FastQTL QTL mapper
  ☆71Mar 19, 2023Updated 2 years ago
• mikegloudemans / gwas-download

  View on GitHub
  Easily download publicly available GWAS summary statistics.
  ☆78Dec 3, 2023Updated 2 years ago
• broadinstitute / tensorqtl

  View on GitHub
  Ultrafast GPU-enabled QTL mapper
  ☆203Jun 29, 2025Updated 7 months ago
• opentargets / genetics-colocalisation

  View on GitHub
  Colocalisation pipeline for Open Targets Genetics
  ☆17Apr 8, 2022Updated 3 years ago
• qtltools / qtltools

  View on GitHub
  A complete tool set for molecular QTL discovery and analysis
  ☆60Apr 16, 2024Updated last year
• chr1swallace / coloc

  View on GitHub
  Repo for the R package coloc
  ☆188Dec 4, 2025Updated 2 months ago
• hakyimlab / PredictDBPipeline

  View on GitHub
  ☆16Dec 7, 2020Updated 5 years ago
• yiminghu / post-GWAS-pipeline

  View on GitHub
  A comprehensive pipeline for post-GWAS analysis leveraging diverse types of omics data
  ☆29Aug 2, 2022Updated 3 years ago
• MRCIEU / PhenoSpD

  View on GitHub
  ☆18Dec 1, 2017Updated 8 years ago
• bogdanlab / focus

  View on GitHub
  FOCUS: Fine-mapping Of CaUsal gene Sets
  ☆48Aug 30, 2023Updated 2 years ago
• douglasyao / mesc

  View on GitHub
  Mediated Expression Score Regression (MESC)
  ☆27Nov 4, 2025Updated 3 months ago
• hailianghuang / FM-summary

  View on GitHub
  Fine-mapping method only using summary statistics
  ☆20Mar 23, 2016Updated 9 years ago
• segrelabgenomics / QTLEnrich

  View on GitHub
  Assessing enrichment of complex disease or trait associations among QTLs
  ☆15Jun 15, 2020Updated 5 years ago
• gamazonlab / MR-JTI

  View on GitHub
  ☆57Jan 16, 2025Updated last year
• FinucaneLab / pops

  View on GitHub
  ☆90Jul 21, 2025Updated 6 months ago
• anastasia-lucas / hudson

  View on GitHub
  An R package for creating mirrored Manhattan plots
  ☆18Sep 30, 2022Updated 3 years ago
• opentargets / genetics-gold-standards

  View on GitHub
  GWAS gold standards repository
  ☆40Nov 23, 2023Updated 2 years ago
• dcalderon / rolypoly

  View on GitHub
  Method for identifying trait-relevant gene annotations from GWAS summary statistics.
  ☆18Jun 29, 2022Updated 3 years ago
• clagiamba / moloc

  View on GitHub
  ☆38Jan 20, 2021Updated 5 years ago
• RajLabMSSM / ggLocusZoom

  View on GitHub
  Create LocusZoom-style plots in R.
  ☆22Mar 5, 2023Updated 2 years ago
• kieranrcampbell / pseudogp

  View on GitHub
  Probabilistic pseudotime for single-cell RNA-seq data
  ☆10Oct 6, 2017Updated 8 years ago
• cotsapaslab / jlim

  View on GitHub
  ☆10Jan 20, 2023Updated 3 years ago
• MRCIEU / genetics.binaRies

  View on GitHub
  Binaries for tools used in genetics in an R package
  ☆12Apr 7, 2025Updated 10 months ago
• AllenInstitute / scrattch.io

  View on GitHub
  Functions for handling RNA-seq files and formats as input and output for scrattch functions.
  ☆11Aug 20, 2025Updated 5 months ago
• hakyimlab / gtex-gwas-analysis

  View on GitHub
  ☆24Aug 6, 2021Updated 4 years ago
• stephenslab / mashr

  View on GitHub
  An R package for multivariate adaptive shrinkage.
  ☆93Nov 7, 2024Updated last year
• stormlovetao / eQTLQC

  View on GitHub
  ☆27Sep 24, 2020Updated 5 years ago